Clone FI20117 Report

Search the DGRC for FI20117

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:201
Well:17
Vector:pFlc-1
Associated Gene/TranscripteIF4AIII-RA
Protein status:FI20117.pep: gold
Sequenced Size:1491

Clone Sequence Records

FI20117.complete Sequence

1491 bp assembled on 2012-04-17

GenBank Submission: BT133445.1

> FI20117.complete
AATTGATAGGCCACCCCTAGTAAGCGGACCGCATTTTTTTCTGTGAAAGT
CAGAAAAATTAGCCGAAAAAGACTGTAAATATTTATTAATATCAGCCGAA
ACCGCACGCGAACAAATCGTGAACATGGCGCGCAAGAATGCCCAGGCGGA
GGACCTCTCCAACGTGGAGTTCGAGACGAGCGAGGATGTGGAGGTGATAC
CCACATTCAACGCCATGAATCTAAAGGAGGAGCTGCTACGCGGCATCTAC
GCGTACGGCTTCGAGAAACCCTCGGCCATTCAGCAAAGGAGCATTACGCC
TATCGTCAAGGGACGGGATGTGATTGCCCAGGCGCAATCAGGCACGGGCA
AAACCGCCACCTTCTCCATCTCCATCCTGCAGAGCCTGGACACCACGCTG
CGGGAGACGCAGGTTCTGTGCCTGTCGCCCACTCGCGAGTTGGCTGTGCA
AATCCAGAAAGTCATTCTTGCCCTCGGCGACATGATGAATGTCCAGTGCC
ATGTGTGCATCGGTGGCACCAACCTGGGCGAGGATATCCGCAAATTGGAC
TACGGTCAACACATTGTGAGCGGCACTCCAGGACGAGTCTTCGACATGAT
CAAGCGACGAGTGCTGCGAACAAGAGCCATCAAGATGCTAGTGCTGGACG
AAGCTGACGAGATGCTTAATAAGGGTTTCAAGGAACAGATATACGATGTG
TATCGCTACTTGCCACCAGCCACCCAGGTGGTGCTCATCTCAGCTACCTT
GCCCCACGAGATACTCGAGATGACCTCCAAATTTATGACAGATCCGATTC
GCATCTTGGTCAAGCGTGACGAATTGACACTGGAAGGCATCAAGCAGTTC
TTCGTCGCCGTGGAGCGCGAGGAATGGAAATTCGATACCCTGTGCGATCT
GTACGATACTCTGACCATTACCCAGGCCGTCATCTTCTGCAACACGAAAC
GCAAGGTGGACTGGCTGACGGAGAAGATGCGCGAGGCTAACTTTACAGTC
AGCTCGATGCACGGCGATATGCCGCAAAAGGAGCGTGACGAGATCATGAA
GGAGTTCCGAGCCGGCCAGTCGCGAGTGCTCATCACCACCGATGTGTGGG
CTCGGGGTATCGATGTACAGCAGGTGTCGCTGGTCATCAACTACGATTTG
CCCAACAACCGTGAGCTGTACATCCATCGCATCGGTCGTTCTGGTCGTTT
CGGACGCAAAGGTGTTGCAATTAACTTTGTCAAATCGGACGATATCCGCA
TCCTGCGCGACATTGAGCAGTACTACTCCACACAAATCGACGAGATGCCC
ATGAACGTGGCTGACTTGATCTAAACTAATATTCTATCATTACTTTTATG
TAACGCACTTTTCCTAGCCGTAACAACAAACGAATGAAGTAAATACATTT
GAAGAGTATTTGAATTTCAATAGACAACCAAAATCTGTATAATAATAATA
AATAACACGTAAGAATTTAATACAGAAAAAAAAAAAAAAAA

FI20117.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4140222..4140881 816..1475 3300 100 Plus
chr3R 27901430 chr3R 4139547..4139914 257..624 1825 99.7 Plus
chr3R 27901430 chr3R 4139231..4139488 1..258 1275 99.6 Plus
chr3R 27901430 chr3R 4139968..4140161 623..816 970 100 Plus
chr2L 23010047 chr2L 5983521..5983665 801..945 260 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8314205..8314867 816..1478 3315 100 Plus
3R 32079331 3R 8313530..8313897 257..624 1825 99.7 Plus
3R 32079331 3R 8313214..8313471 1..258 1290 100 Plus
3R 32079331 3R 8313951..8314144 623..816 970 100 Plus
2L 23513712 2L 5984470..5984614 801..945 260 78.6 Plus
Blast to na_te.dros performed 2019-03-15 13:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1118..1226 1472..1365 145 62.7 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1131..1241 1473..1365 134 62.5 Minus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 854..966 1361..1470 124 62.6 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1073..1225 1472..1319 117 57.1 Minus

FI20117.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:45:50 Download gff for FI20117.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4139231..4139487 1..257 99 -> Plus
chr3R 4139548..4139914 258..624 99 -> Plus
chr3R 4139970..4140161 625..816 100 -> Plus
chr3R 4140223..4140881 817..1475 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-04-17 17:25:37 Download gff for FI20117.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4AIII-RA 1..1200 125..1324 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:12:06 Download gff for FI20117.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4AIII-RA 1..1200 125..1324 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:40:38 Download gff for FI20117.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4AIII-RA 1..1200 125..1324 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-17 17:25:37 Download gff for FI20117.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4AIII-RA 1..1475 1..1475 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:12:06 Download gff for FI20117.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4AIII-RA 7..1481 1..1475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:40:38 Download gff for FI20117.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4AIII-RA 7..1481 1..1475 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:50 Download gff for FI20117.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8313214..8313470 1..257 100 -> Plus
3R 8313531..8313897 258..624 99 -> Plus
3R 8313953..8314144 625..816 100 -> Plus
3R 8314206..8314864 817..1475 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:50 Download gff for FI20117.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8313214..8313470 1..257 100 -> Plus
3R 8313531..8313897 258..624 99 -> Plus
3R 8313953..8314144 625..816 100 -> Plus
3R 8314206..8314864 817..1475 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:50 Download gff for FI20117.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8313214..8313470 1..257 100 -> Plus
3R 8313531..8313897 258..624 99 -> Plus
3R 8313953..8314144 625..816 100 -> Plus
3R 8314206..8314864 817..1475 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:12:06 Download gff for FI20117.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4138936..4139192 1..257 100 -> Plus
arm_3R 4139253..4139619 258..624 99 -> Plus
arm_3R 4139675..4139866 625..816 100 -> Plus
arm_3R 4139928..4140586 817..1475 100   Plus

FI20117.hyp Sequence

Translation from 124 to 1323

> FI20117.hyp
MARKNAQAEDLSNVEFETSEDVEVIPTFNAMNLKEELLRGIYAYGFEKPS
AIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLCL
SPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQHIVSG
TPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT
QVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREE
WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMP
QKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYI
HRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVADLI*

FI20117.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4AIII-PA 399 CG7483-PA 1..399 1..399 2029 100 Plus
eIF-4a-PF 403 CG9075-PF 27..403 23..399 1398 70.6 Plus
eIF-4a-PE 403 CG9075-PE 27..403 23..399 1398 70.6 Plus
eIF-4a-PD 403 CG9075-PD 27..403 23..399 1398 70.6 Plus
eIF-4a-PB 403 CG9075-PB 27..403 23..399 1398 70.6 Plus

FI20117.pep Sequence

Translation from 124 to 1323

> FI20117.pep
MARKNAQAEDLSNVEFETSEDVEVIPTFNAMNLKEELLRGIYAYGFEKPS
AIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLCL
SPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQHIVSG
TPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT
QVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREE
WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMP
QKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYI
HRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVADLI*

FI20117.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18341-PA 399 GF18341-PA 1..399 1..399 2126 99.7 Plus
Dana\GF15595-PA 389 GF15595-PA 13..389 23..399 1384 70.6 Plus
Dana\GF15754-PA 460 GF15754-PA 61..423 28..392 699 38.4 Plus
Dana\GF20554-PA 394 GF20554-PA 46..390 25..361 660 38.2 Plus
Dana\GF14747-PA 424 GF14747-PA 43..412 28..392 640 37.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24917-PA 399 GG24917-PA 1..399 1..399 2126 99.7 Plus
Dere\GG25110-PA 389 GG25110-PA 13..389 23..399 1381 70.6 Plus
Dere\GG10095-PA 459 GG10095-PA 60..422 28..392 700 38.4 Plus
Dere\GG24297-PA 424 GG24297-PA 43..412 28..392 640 37.7 Plus
Dere\GG17436-PA 793 GG17436-PA 266..687 12..398 599 35.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14195-PA 399 GH14195-PA 1..399 1..399 2126 99.7 Plus
Dgri\GH11018-PA 389 GH11018-PA 13..389 23..399 1380 70.3 Plus
Dgri\GH15125-PA 465 GH15125-PA 77..460 25..399 700 36.4 Plus
Dgri\GH13374-PA 459 GH13374-PA 60..403 28..373 687 39 Plus
Dgri\GH11448-PA 424 GH11448-PA 43..412 28..392 637 37.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7483-PA 399 CG7483-PA 1..399 1..399 2029 100 Plus
eIF4A-PF 403 CG9075-PF 27..403 23..399 1398 70.6 Plus
eIF4A-PE 403 CG9075-PE 27..403 23..399 1398 70.6 Plus
eIF4A-PD 403 CG9075-PD 27..403 23..399 1398 70.6 Plus
eIF4A-PB 403 CG9075-PB 27..403 23..399 1398 70.6 Plus
eIF4A-PC 403 CG9075-PC 27..403 23..399 1398 70.6 Plus
eIF4A-PA 403 CG9075-PA 27..403 23..399 1398 70.6 Plus
me31B-PB 428 CG4916-PB 29..391 28..392 673 38.4 Plus
me31B-PA 459 CG4916-PA 60..422 28..392 673 38.4 Plus
Dbp80-PB 447 CG17023-PB 72..417 25..362 647 39 Plus
Dbp80-PE 481 CG17023-PE 72..441 25..382 636 37.3 Plus
Hel25E-PB 424 CG7269-PB 43..415 28..395 621 37.4 Plus
Hel25E-PA 424 CG7269-PA 43..415 28..395 621 37.4 Plus
Hel25E-PC 424 CG7269-PC 43..415 28..395 621 37.4 Plus
bel-PA 798 CG9748-PA 271..692 12..398 586 35.8 Plus
bel-PB 801 CG9748-PB 271..692 12..398 586 35.8 Plus
CG10077-PD 818 CG10077-PD 139..540 16..394 558 34.3 Plus
CG10077-PA 818 CG10077-PA 139..540 16..394 558 34.3 Plus
CG7878-PA 703 CG7878-PA 293..662 36..391 546 35.2 Plus
mahe-PC 945 CG10777-PC 236..606 25..380 540 34.5 Plus
mahe-PB 945 CG10777-PB 236..606 25..380 540 34.5 Plus
CG6227-PA 1224 CG6227-PA 494..872 10..380 526 32.6 Plus
CG9253-PA 507 CG9253-PA 46..423 9..388 524 31.8 Plus
Rm62-PH 575 CG10279-PH 136..522 25..394 521 33.3 Plus
Rm62-PD 575 CG10279-PD 136..522 25..394 521 33.3 Plus
Rm62-PI 578 CG10279-PI 139..525 25..394 521 33.3 Plus
Rm62-PF 578 CG10279-PF 139..525 25..394 521 33.3 Plus
Rm62-PE 578 CG10279-PE 139..525 25..394 521 33.3 Plus
Rm62-PB 578 CG10279-PB 139..525 25..394 521 33.3 Plus
Rm62-PC 578 CG10279-PC 139..525 25..394 521 33.3 Plus
Rm62-PA 719 CG10279-PA 280..666 25..394 521 33.3 Plus
vas-PC 661 CG46283-PC 236..601 18..377 514 32.9 Plus
vas-PB 661 CG46283-PB 236..601 18..377 514 32.9 Plus
vas-PA 661 CG46283-PA 236..601 18..377 514 32.9 Plus
Gem3-PB 1028 CG6539-PB 14..378 17..371 511 32.5 Plus
Gem3-PA 1028 CG6539-PA 14..378 17..371 511 32.5 Plus
CG32344-PA 827 CG32344-PA 41..408 28..397 497 32.1 Plus
CG6418-PB 791 CG6418-PB 268..649 25..393 490 29.4 Plus
Rs1-PB 782 CG2173-PB 148..518 17..380 484 32.3 Plus
Rs1-PA 782 CG2173-PA 148..518 17..380 484 32.3 Plus
CG10333-PA 822 CG10333-PA 381..786 13..385 477 30.2 Plus
Dbp45A-PA 521 CG12759-PA 9..381 28..394 470 33.5 Plus
abs-PA 619 CG14637-PA 176..556 25..392 467 30.8 Plus
Dbp80-PF 316 CG17023-PF 16..276 135..382 440 36.4 Plus
Dbp80-PG 354 CG17023-PG 72..322 25..273 428 37 Plus
CG10077-PC 472 CG10077-PC 139..468 16..329 428 32.4 Plus
pit-PC 680 CG6375-PC 174..547 11..378 420 30.2 Plus
pit-PA 680 CG6375-PA 174..547 11..378 420 30.2 Plus
pit-PB 680 CG6375-PB 174..547 11..378 420 30.2 Plus
Rm62-PK 485 CG10279-PK 136..451 25..330 411 33.2 Plus
Rm62-PM 478 CG10279-PM 136..453 25..332 410 33 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24868-PA 399 GI24868-PA 1..399 1..399 2126 99.7 Plus
Dmoj\GI17537-PA 389 GI17537-PA 13..389 23..399 1383 70.6 Plus
Dmoj\GI18279-PA 459 GI18279-PA 60..422 28..392 703 38.6 Plus
Dmoj\GI13776-PA 448 GI13776-PA 77..443 25..399 694 37 Plus
Dmoj\GI21901-PA 424 GI21901-PA 43..412 28..392 640 38 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23429-PA 399 GL23429-PA 1..399 1..399 2118 99.5 Plus
Dper\GL19047-PA 386 GL19047-PA 13..386 23..399 1347 69.8 Plus
Dper\GL19172-PA 459 GL19172-PA 60..422 28..392 701 38.4 Plus
Dper\GL21967-PA 415 GL21967-PA 69..412 25..360 665 38.6 Plus
Dper\GL25900-PA 403 GL25900-PA 43..391 28..392 591 36.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20384-PA 399 GA20384-PA 1..399 1..399 2118 99.5 Plus
Dpse\GA21521-PA 404 GA21521-PA 28..404 23..399 1383 70.6 Plus
Dpse\GA20225-PA 424 GA20225-PA 43..412 28..392 637 38 Plus
Dpse\GA27302-PA 800 GA27302-PA 267..689 12..399 589 35.5 Plus
Dpse\GA28589-PA 799 GA28589-PA 114..524 1..393 577 34.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23722-PA 399 GM23722-PA 1..399 1..399 2130 99.7 Plus
Dsec\GM18587-PA 403 GM18587-PA 27..403 23..399 1376 70.3 Plus
Dsec\GM18037-PA 459 GM18037-PA 60..422 28..392 703 38.4 Plus
Dsec\GM18014-PA 424 GM18014-PA 43..412 28..392 621 37.7 Plus
Dsec\GM26328-PA 797 GM26328-PA 270..691 12..398 600 35.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23375-PA 403 GD23375-PA 27..403 23..399 1376 70.3 Plus
Dsim\GD23667-PA 459 GD23667-PA 60..422 28..392 703 38.4 Plus
Dsim\GD11942-PA 481 GD11942-PA 72..474 25..397 687 35.5 Plus
Dsim\GD11981-PA 424 GD11981-PA 43..412 28..392 621 37.7 Plus
Dsim\GD20854-PA 784 GD20854-PA 271..678 12..398 610 36 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24512-PA 399 GJ24512-PA 1..399 1..399 2126 99.7 Plus
Dvir\GJ15436-PA 403 GJ15436-PA 27..403 23..399 1389 70.6 Plus
Dvir\Dbp80-PA 465 GJ13581-PA 77..460 25..399 707 36.7 Plus
Dvir\GJ17531-PA 459 GJ17531-PA 60..422 28..392 704 38.6 Plus
Dvir\GJ17817-PA 424 GJ17817-PA 43..412 28..392 640 38 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13178-PA 395 GK13178-PA 2..395 6..399 2093 99.5 Plus
Dwil\GK14711-PA 425 GK14711-PA 49..425 23..399 1398 70.8 Plus
Dwil\GK17722-PA 321 GK17722-PA 28..284 27..277 871 61.4 Plus
Dwil\GK12237-PA 478 GK12237-PA 90..473 25..399 714 37.5 Plus
Dwil\GK21209-PA 457 GK21209-PA 58..420 28..392 703 38.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25867-PA 399 GE25867-PA 1..399 1..399 2126 99.7 Plus
Dyak\eIF-4a-PA 415 GE25788-PA 39..415 23..399 1381 70.6 Plus
Dyak\me31B-PA 459 GE18909-PA 60..422 28..392 700 38.4 Plus
Dyak\Hel25E-PA 424 GE18993-PA 43..412 28..392 640 37.7 Plus
Dyak\bel-PA 792 GE24837-PA 266..687 12..398 597 35.8 Plus