Clone FI20123 Report

Search the DGRC for FI20123

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:201
Well:23
Vector:pFlc-1
Associated Gene/TranscriptRFeSP-RA
Protein status:FI20123.pep: gold
Sequenced Size:931

Clone Sequence Records

FI20123.complete Sequence

931 bp assembled on 2012-04-04

GenBank Submission: BT133353.1

> FI20123.complete
GACTTGAGTGCGGTCACACTGGTTCTCAGACGAAAACGACAAACGTCGAA
ATTTTCGTGATCATTTAATTTGATAGGGAAACATACAAAATGATGAACGC
CGTGTCGCGTGCTTACGTCAGAGGCGGAGCCCAGGTCCTCTCCACGGGAT
TGAAGGCGAGCGGCGTGGCCGTCAACTCGATGGCCAATCGCCAGGCACAC
ACCGACCTGCAGGTGCCAGACTTCTCGGCATACCGCCGGGAGTCCGTGAA
GGACAGTCGTCGTCGCAACGACACCGCCGAGGAGCGCAAGGCCTTCTCCT
ACTTGATGGTCGGCGCCGGGGCCGTGGGCGGTGCCTATGCGGCCAAGGGC
CTGGTTAACACCTTCATCGGATCGATGAGCGCCTCCGCCGAAGTGCTGGC
CATGGCCAAGATCGAGATCAAGCTGTCCGACATCCCGGAGGGCAAGTCGG
TTACTTTCAAGTGGCGCGGAAAGCCCCTGTTCATCCGCCACCGCACGGCC
GCGGAAATCGAGACCGAGCGAAATGTGCCCACATCCACGCTGCGCGATCC
GGAGGCTGATGATGTAGGTACCGTGGAGTGGGTCGATTCGCTAATGCTGT
TACCCATTTCCTCTTTAGCAACGTGTGATCAAGCCCGAGTGGCTGGTGGT
CATCGGAGTGTGCACGCATCTGGGCTGTGTGCCCATCGCGAACGCCGGCG
ACTGGGGTGGCTACTACTGCCCCTGCCACGGCTCCCACTACGACGCCTCC
GGAAGGATCCGCAAGGGACCCGCGCCCCTCAACTTGGAGGTGCCCACCCA
CGAGTTCCCCAACGAGGGTCTTCTCGTGGTCGGCTAGAGGAGCTGTTATC
GTTTAAGCCCCCAACTGCATAGTGAATGGATCGATGTAAATTAATAAATA
CAACCAAACAGAACGAAAAAAAAAAAAAAAA

FI20123.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1612572..1613304 915..183 3560 99 Minus
chr2L 23010047 chr2L 1613863..1614044 183..2 880 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1612691..1613424 916..183 3655 99.9 Minus
2L 23513712 2L 1613983..1614164 183..2 910 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:15:03 has no hits.

FI20123.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:16:15 Download gff for FI20123.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1612572..1613303 184..915 99 <- Minus
chr2L 1613863..1614044 1..183 98   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-04-04 13:43:32 Download gff for FI20123.complete
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RA 1..783 90..872 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:59:46 Download gff for FI20123.complete
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RB 1..480 90..569 99 == Plus
RFeSP-RB 481..693 625..837 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:25:52 Download gff for FI20123.complete
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RB 1..480 90..569 99 == Plus
RFeSP-RB 481..693 625..837 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-04 13:43:32 Download gff for FI20123.complete
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RA 18..932 1..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:59:46 Download gff for FI20123.complete
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RB 1..564 6..569 99 == Plus
RFeSP-RB 565..851 625..911 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:25:52 Download gff for FI20123.complete
Subject Subject Range Query Range Percent Splice Strand
RFeSP-RB 1..564 6..569 99 == Plus
RFeSP-RB 565..851 625..911 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:16:15 Download gff for FI20123.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1612692..1613423 184..915 99 <- Minus
2L 1613983..1614164 1..183 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:16:15 Download gff for FI20123.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1612692..1613423 184..915 99 <- Minus
2L 1613983..1614164 1..183 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:16:15 Download gff for FI20123.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1612692..1613423 184..915 99 <- Minus
2L 1613983..1614164 1..183 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:59:46 Download gff for FI20123.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1612692..1613423 184..915 99 <- Minus
arm_2L 1613983..1614164 1..183 99   Minus

FI20123.pep Sequence

Translation from 89 to 871

> FI20123.pep
MMNAVSRAYVRGGAQVLSTGLKASGVAVNSMANRQAHTDLQVPDFSAYRR
ESVKDSRRRNDTAEERKAFSYLMVGAGAVGGAYAAKGLVNTFIGSMSASA
EVLAMAKIEIKLSDIPEGKSVTFKWRGKPLFIRHRTAAEIETERNVPTST
LRDPEADDVGTVEWVDSLMLLPISSLATCDQARVAGGHRSVHASGLCAHR
ERRRLGWLLLPLPRLPLRRLRKDPQGTRAPQLGGAHPRVPQRGSSRGRLE
ELLSFKPPTA*

FI20123.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14036-PA 230 GF14036-PA 1..178 1..179 731 77.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24583-PA 230 GG24583-PA 1..178 1..179 722 87.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10320-PA 230 GH10320-PA 1..178 1..179 685 74 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
RFeSP-PE 230 CG7361-PE 1..167 1..165 790 95.8 Plus
RFeSP-PD 230 CG7361-PD 1..167 1..165 790 95.8 Plus
RFeSP-PB 230 CG7361-PB 1..167 1..165 790 95.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17080-PA 227 GI17080-PA 1..175 1..179 659 73.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14741-PA 230 GL14741-PA 1..158 1..158 635 84.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25273-PA 230 GA25273-PA 1..158 1..158 638 85.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16602-PA 230 GM16602-PA 1..178 1..179 810 89 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22901-PA 249 GD22901-PA 1..178 1..179 812 89 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10683-PA 227 GJ10683-PA 1..175 1..179 643 72.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14939-PA 221 GK14939-PA 1..169 1..179 637 70.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\RFeSP-PA 230 GE15522-PA 1..178 1..179 722 87.8 Plus

FI20123.hyp Sequence

Translation from 89 to 871

> FI20123.hyp
MMNAVSRAYVRGGAQVLSTGLKASGVAVNSMANRQAHTDLQVPDFSAYRR
ESVKDSRRRNDTAEERKAFSYLMVGAGAVGGAYAAKGLVNTFIGSMSASA
EVLAMAKIEIKLSDIPEGKSVTFKWRGKPLFIRHRTAAEIETERNVPTST
LRDPEADDVGTVEWVDSLMLLPISSLATCDQARVAGGHRSVHASGLCAHR
ERRRLGWLLLPLPRLPLRRLRKDPQGTRAPQLGGAHPRVPQRGSSRGRLE
ELLSFKPPTA*

FI20123.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
RFeSP-PE 230 CG7361-PE 1..167 1..165 790 95.8 Plus
RFeSP-PD 230 CG7361-PD 1..167 1..165 790 95.8 Plus
RFeSP-PB 230 CG7361-PB 1..167 1..165 790 95.8 Plus