Clone FI20196 Report

Search the DGRC for FI20196

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:201
Well:96
Vector:pFlc-1
Associated Gene/Transcriptnord-RA
Protein status:FI20196.pep: gold
Sequenced Size:2824

Clone Sequence Records

FI20196.complete Sequence

2824 bp assembled on 2012-04-30

GenBank Submission: BT133485.1

> FI20196.complete
ATTTTGCGTTTGCACGTCAAGGCAAGCGGACGACGAGGACGAGCGGCGAG
ATACTGCGGAAACAAGTGGCAGCAAGTGGCAAGAGCTGAACTTCCGCACC
CGGGAAACGGTCGCGTGTGCTCCGAGTGGAAATACGGAAATACGGAAAAT
TCGGAAAATTTGAACGCGTGTTCGCCGAGTCGGGGGAAGCGCCGGCAAGT
GCCCGCTGAAGAATCGCAACTATGCGTGCGACCACAAATCAAAATACGAA
TTTATGAAAAGTGCTCGCTCGCCAGGCAAAACCGCAGAACACGCACTCAG
AGGTTGTTTCACCTAGTCAAAACCCAAACTTCAATAAAAGAACCAAACAA
GTGAAAAATAAATATACAAAGTGAACTAATGCAAAGGAGCACCATGTTGC
CAGGAGTGGAGCTGCTGCTGCTGTTCCTGCTGAGCACGTCGCTGCACGCG
GAGATCTCCCACTTGCCGATGGCCAGCAACCGCATCATTCTGGACTCCAC
GGAGCTGCTCCAGAACCCGCTGATCCAGGACGCCGGTGTGCCAGCGGCCA
GGGCGACGCCACTTCCACCGCAAAAGTGTCCTTCGCTGCAGCGGTACCGC
AAGATGCTAAAGGACTTCGACGACCTGGAGGACCTCTACGTGGACGTGCC
CGTGCATATAGCTCTGGCGGAGCGGCAGAGGAAGCGATTTGTGCTGAACC
TGAACGACTCGACGCCGCTGACGATTCGCTTTTCGGCGCCCGTGGGCCGC
AAGATGTACTACAATCAGACAGGAAACCCCCTTCGGCCGGCGGCAGTGGC
ACCTGGGCCAGGTGTGGCTGTGGGCAGTCTGGTGCTGCCCTGCGCCCTGC
GTGGCCAGTACGACCTCTTCGTCCTCGCCCGCCACTCGGGAGCCCTCAAG
GTGGACGCCCTGGCAGAGCATCCCCAGCACGACTGGCCCCTCCTCAACGC
CACGCACCGAATCGCCATTCGCACCCAGAATCGCGTGCGGAAGCGCGAGA
TGATCGTCAAGTGGGAAAGGAGCAAGTTTGATTTCCATGTCATGCACTAT
TGCCTGGTGATTCAGAGACTCTCCATGGACACGCCGCGGATGATCTTCAC
CAACTTCTGCCAGGCGGTGTCCGCCTACACGGACCAGCAGCCCATGACTC
CCAGTTGCGCCGCAGGCGGTCCCTTGGAAGGGATTTGGGGTGCTCCACCC
CAGCGGGAAAGGAGACTTAATCCTAGGCAGAACGTTCACATCGTGTGCAC
GGGGAAGAGGCGCCAACAGCTGCTGCGACGCCTTCTTCCGAGGAGCAGTT
ACCATCTGGACCTGTTCGGAATCCACCAGGGTAGACAGAACCTCACCCTG
CGACTGGCCAGCAGCCAGGTGAACTTTAACCGCACCCAACCTCTGGCCCT
GAAGCAGCAGGCTCTGATGCAACTCAAGATCGGTGGACAGCACGGGAAGC
AGGTGTACAGCTTCAAGGTTCCGCAGACGACTCGCCAGCTGGGGGAGCCG
TTCATGAGGCACCTTTTGATCCCTTGCTCGGGCAGCGAAATCCGGGTGAA
GCTGCTACGGCAACGCAGCGAGGTGGGGAAAACGGAGGCCTTCTATAGTC
CAACGTACATTCGGCAGAAGGGAGTCCTACCAGGGGAGCGCTATCTCATG
CGGTTCGAGCCCAGCAACGATGACGAGGCGTTGCGAGCTCAGAAGGTCAT
GGTGGCCCTGAGCAGCGAGGCTCTGTTCCGGGATTTGCCCGAGCTGCCGC
AGAACACGACAGTCTTCAATGTGCGAACGCGGTGCAGCAGAGCCACCATT
GCATGGAATGGCTCACCGGATGAACGGGAGCTGAGCTACTGCATCATAGT
GTTCAACCTGCCGCAGCGCAATCGCAGCGTGGTGGACTTTACCAACTACT
GCATGGACTTTGTGCCCAAGCGGGTGATGCAGTACAGATACTTCGAGTGG
ATGACCTGCAGGGAGAGGCAGCAGAGTCCCGACAACATCGAGACGGAGAC
CATACTGAACCTGATGCCGGGTTCCAGCTACCTGGTCTACGTAACGGCCA
ACCTGAGCATGGGCAAGCCGCTGCCCTACCAGGCGCTGACCCTCCACATG
GCCAGTCAGTGCCTGGACGGATCGCACGAGTCCTTCTACTAAGCGCTACC
AGTGGTGGTCGTAATCCCCCAATCCAAACCCATACCCAAAGCTTCGCTGC
ATTTTCGAATACAAACACTGAACTATCCGTCGTTGTAAAGCTACCTTATC
CACTACGATTACTACACTATCCTACAAAAAACTATGCTGGTTAAAAGACT
ATACACCTAGCTCCATATACTATATATATATATACAATATCGAGGCGTGT
GTTGTGTGGGCGAGTGAGTGTGTGCGTGTGACTTCTGATTGAGTTGCCAT
TTGATTCCAAGTATTTTCGAGTGCTTAGTTTTGTAATTTGTAGCTAGCCG
TTAATGTTTGTATAAACTGTTTCATTGGTTTCCCACTCCGCTTTATTCGA
TAAGCTCGTTTTCTAGATTTTAGCTTTAGCACTCTTAGTTTAATGTTTAA
AGTTAGTTTCGCTGTTAAGTTTACACCGTAGTCGAGGCGTCTTGAGTAGT
TCTTTTGTACATTAAGCTTACACTTAGCTCTACATTAGATATACCATGTC
GAACCTACGAGTCTACGAACATACGAACATATATATGTGCGTTGAAAGCG
TTGTATTTTTTGAAGCCGAACTTATGCAACCGAAAGGAGACAATAAACAA
ATGTGCTATAAAGGACGAAAGTGTCGCAAATAAATGTGAGCCACTGCTAA
AGAAGACCGAAAAAAAAAAAAAAA

FI20196.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20140279..20141120 1975..2809 4040 98.9 Plus
chr2R 21145070 chr2R 20139135..20139817 1021..1703 3310 99 Plus
chr2R 21145070 chr2R 20130634..20131038 282..686 1965 99 Plus
chr2R 21145070 chr2R 20129299..20129579 1..281 1405 100 Plus
chr2R 21145070 chr2R 20138818..20139070 770..1022 1265 100 Plus
chr2R 21145070 chr2R 20140078..20140220 1834..1976 685 98.6 Plus
chr2R 21145070 chr2R 20139885..20140019 1701..1835 630 97.8 Plus
chr2R 21145070 chr2R 20138661..20138748 686..773 425 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24254260..24255095 1975..2810 4165 99.9 Plus
2R 25286936 2R 24253119..24253801 1021..1703 3415 100 Plus
2R 25286936 2R 24244610..24245014 282..686 2025 100 Plus
2R 25286936 2R 24243263..24243543 1..281 1405 100 Plus
2R 25286936 2R 24252802..24253054 770..1022 1265 100 Plus
2R 25286936 2R 24254059..24254201 1834..1976 715 100 Plus
2R 25286936 2R 24253866..24254000 1701..1835 675 100 Plus
2R 25286936 2R 24252645..24252732 686..773 440 100 Plus
Blast to na_te.dros performed 2019-03-15 13:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1272..1325 318..370 141 75.9 Plus
TAHRE 10463 TAHRE OSV 10463bp 7340..7408 319..388 130 70.4 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 641..802 411..565 125 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2772..2848 471..395 124 62.3 Minus

FI20196.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:56:12 Download gff for FI20196.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20129299..20129579 1..281 100 -> Plus
chr2R 20130634..20131038 282..686 99 -> Plus
chr2R 20138662..20138747 687..772 98 -> Plus
chr2R 20138821..20139070 773..1022 100 -> Plus
chr2R 20139137..20139815 1023..1701 98 -> Plus
chr2R 20139886..20140019 1702..1835 97 -> Plus
chr2R 20140080..20140220 1836..1976 98 -> Plus
chr2R 20140281..20141120 1977..2809 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-04-30 10:02:32 Download gff for FI20196.complete
Subject Subject Range Query Range Percent Splice Strand
nord-RA 1..1764 379..2142 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:16:52 Download gff for FI20196.complete
Subject Subject Range Query Range Percent Splice Strand
nord-RA 1..1764 379..2142 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:44:57 Download gff for FI20196.complete
Subject Subject Range Query Range Percent Splice Strand
nord-RA 1..1764 379..2142 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:02:32 Download gff for FI20196.complete
Subject Subject Range Query Range Percent Splice Strand
nord-RA 1..2809 1..2809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:16:52 Download gff for FI20196.complete
Subject Subject Range Query Range Percent Splice Strand
nord-RA 9..2817 1..2809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:44:57 Download gff for FI20196.complete
Subject Subject Range Query Range Percent Splice Strand
nord-RA 9..2817 1..2809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:56:12 Download gff for FI20196.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24243263..24243543 1..281 100 -> Plus
2R 24244610..24245014 282..686 100 -> Plus
2R 24252646..24252731 687..772 100 -> Plus
2R 24252805..24253054 773..1022 100 -> Plus
2R 24253121..24253799 1023..1701 100 -> Plus
2R 24253867..24254000 1702..1835 100 -> Plus
2R 24254061..24254201 1836..1976 100 -> Plus
2R 24254262..24255094 1977..2809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:56:12 Download gff for FI20196.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24243263..24243543 1..281 100 -> Plus
2R 24244610..24245014 282..686 100 -> Plus
2R 24252646..24252731 687..772 100 -> Plus
2R 24252805..24253054 773..1022 100 -> Plus
2R 24253121..24253799 1023..1701 100 -> Plus
2R 24253867..24254000 1702..1835 100 -> Plus
2R 24254061..24254201 1836..1976 100 -> Plus
2R 24254262..24255094 1977..2809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:56:12 Download gff for FI20196.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24243263..24243543 1..281 100 -> Plus
2R 24244610..24245014 282..686 100 -> Plus
2R 24252646..24252731 687..772 100 -> Plus
2R 24252805..24253054 773..1022 100 -> Plus
2R 24253121..24253799 1023..1701 100 -> Plus
2R 24253867..24254000 1702..1835 100 -> Plus
2R 24254061..24254201 1836..1976 100 -> Plus
2R 24254262..24255094 1977..2809 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:16:52 Download gff for FI20196.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20130786..20131066 1..281 100 -> Plus
arm_2R 20132133..20132537 282..686 100 -> Plus
arm_2R 20140169..20140254 687..772 100 -> Plus
arm_2R 20140328..20140577 773..1022 100 -> Plus
arm_2R 20140644..20141322 1023..1701 100 -> Plus
arm_2R 20141390..20141523 1702..1835 100 -> Plus
arm_2R 20141584..20141724 1836..1976 100 -> Plus
arm_2R 20141785..20142617 1977..2809 99   Plus

FI20196.hyp Sequence

Translation from 378 to 2141

> FI20196.hyp
MQRSTMLPGVELLLLFLLSTSLHAEISHLPMASNRIILDSTELLQNPLIQ
DAGVPAARATPLPPQKCPSLQRYRKMLKDFDDLEDLYVDVPVHIALAERQ
RKRFVLNLNDSTPLTIRFSAPVGRKMYYNQTGNPLRPAAVAPGPGVAVGS
LVLPCALRGQYDLFVLARHSGALKVDALAEHPQHDWPLLNATHRIAIRTQ
NRVRKREMIVKWERSKFDFHVMHYCLVIQRLSMDTPRMIFTNFCQAVSAY
TDQQPMTPSCAAGGPLEGIWGAPPQRERRLNPRQNVHIVCTGKRRQQLLR
RLLPRSSYHLDLFGIHQGRQNLTLRLASSQVNFNRTQPLALKQQALMQLK
IGGQHGKQVYSFKVPQTTRQLGEPFMRHLLIPCSGSEIRVKLLRQRSEVG
KTEAFYSPTYIRQKGVLPGERYLMRFEPSNDDEALRAQKVMVALSSEALF
RDLPELPQNTTVFNVRTRCSRATIAWNGSPDERELSYCIIVFNLPQRNRS
VVDFTNYCMDFVPKRVMQYRYFEWMTCRERQQSPDNIETETILNLMPGSS
YLVYVTANLSMGKPLPYQALTLHMASQCLDGSHESFY*

FI20196.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
nord-PA 587 CG30418-PA 1..587 1..587 3075 100 Plus

FI20196.pep Sequence

Translation from 378 to 2141

> FI20196.pep
MQRSTMLPGVELLLLFLLSTSLHAEISHLPMASNRIILDSTELLQNPLIQ
DAGVPAARATPLPPQKCPSLQRYRKMLKDFDDLEDLYVDVPVHIALAERQ
RKRFVLNLNDSTPLTIRFSAPVGRKMYYNQTGNPLRPAAVAPGPGVAVGS
LVLPCALRGQYDLFVLARHSGALKVDALAEHPQHDWPLLNATHRIAIRTQ
NRVRKREMIVKWERSKFDFHVMHYCLVIQRLSMDTPRMIFTNFCQAVSAY
TDQQPMTPSCAAGGPLEGIWGAPPQRERRLNPRQNVHIVCTGKRRQQLLR
RLLPRSSYHLDLFGIHQGRQNLTLRLASSQVNFNRTQPLALKQQALMQLK
IGGQHGKQVYSFKVPQTTRQLGEPFMRHLLIPCSGSEIRVKLLRQRSEVG
KTEAFYSPTYIRQKGVLPGERYLMRFEPSNDDEALRAQKVMVALSSEALF
RDLPELPQNTTVFNVRTRCSRATIAWNGSPDERELSYCIIVFNLPQRNRS
VVDFTNYCMDFVPKRVMQYRYFEWMTCRERQQSPDNIETETILNLMPGSS
YLVYVTANLSMGKPLPYQALTLHMASQCLDGSHESFY*

FI20196.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11385-PA 588 GF11385-PA 1..588 6..587 2427 78.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22954-PA 582 GG22954-PA 1..582 6..587 2885 95.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20979-PA 597 GH20979-PA 28..587 24..580 1811 62.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
nord-PA 587 CG30418-PA 1..587 1..587 3075 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21315-PA 577 GI21315-PA 13..567 10..580 1784 61.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19995-PA 577 GL19995-PA 18..577 24..587 2286 75 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15831-PA 577 GA15831-PA 18..577 24..587 2285 75.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11848-PA 1037 GM11848-PA 1..279 2..280 1461 97.5 Plus
Dsec\GM11848-PA 1037 GM11848-PA 379..471 349..441 488 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11846-PA 563 GD11846-PA 1..563 6..587 2935 95.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21584-PA 582 GJ21584-PA 19..572 20..580 1793 63 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15783-PA 596 GK15783-PA 29..596 24..587 2146 71.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14391-PA 583 GE14391-PA 1..583 6..587 2855 95 Plus