BDGP Sequence Production Resources |
Search the DGRC for FI20196
Library: | FI |
Tissue Source: | various Drosophila melanogaster |
Created by: | |
Date Registered: | 2005-11-08 |
Comments: | Drosophila melanogaster corrected cDNA clones |
Original Plate Number: | 201 |
Well: | 96 |
Vector: | pFlc-1 |
Associated Gene/Transcript | nord-RA |
Protein status: | FI20196.pep: gold |
Sequenced Size: | 2824 |
2824 bp assembled on 2012-04-30
GenBank Submission: BT133485.1
> FI20196.complete ATTTTGCGTTTGCACGTCAAGGCAAGCGGACGACGAGGACGAGCGGCGAG ATACTGCGGAAACAAGTGGCAGCAAGTGGCAAGAGCTGAACTTCCGCACC CGGGAAACGGTCGCGTGTGCTCCGAGTGGAAATACGGAAATACGGAAAAT TCGGAAAATTTGAACGCGTGTTCGCCGAGTCGGGGGAAGCGCCGGCAAGT GCCCGCTGAAGAATCGCAACTATGCGTGCGACCACAAATCAAAATACGAA TTTATGAAAAGTGCTCGCTCGCCAGGCAAAACCGCAGAACACGCACTCAG AGGTTGTTTCACCTAGTCAAAACCCAAACTTCAATAAAAGAACCAAACAA GTGAAAAATAAATATACAAAGTGAACTAATGCAAAGGAGCACCATGTTGC CAGGAGTGGAGCTGCTGCTGCTGTTCCTGCTGAGCACGTCGCTGCACGCG GAGATCTCCCACTTGCCGATGGCCAGCAACCGCATCATTCTGGACTCCAC GGAGCTGCTCCAGAACCCGCTGATCCAGGACGCCGGTGTGCCAGCGGCCA GGGCGACGCCACTTCCACCGCAAAAGTGTCCTTCGCTGCAGCGGTACCGC AAGATGCTAAAGGACTTCGACGACCTGGAGGACCTCTACGTGGACGTGCC CGTGCATATAGCTCTGGCGGAGCGGCAGAGGAAGCGATTTGTGCTGAACC TGAACGACTCGACGCCGCTGACGATTCGCTTTTCGGCGCCCGTGGGCCGC AAGATGTACTACAATCAGACAGGAAACCCCCTTCGGCCGGCGGCAGTGGC ACCTGGGCCAGGTGTGGCTGTGGGCAGTCTGGTGCTGCCCTGCGCCCTGC GTGGCCAGTACGACCTCTTCGTCCTCGCCCGCCACTCGGGAGCCCTCAAG GTGGACGCCCTGGCAGAGCATCCCCAGCACGACTGGCCCCTCCTCAACGC CACGCACCGAATCGCCATTCGCACCCAGAATCGCGTGCGGAAGCGCGAGA TGATCGTCAAGTGGGAAAGGAGCAAGTTTGATTTCCATGTCATGCACTAT TGCCTGGTGATTCAGAGACTCTCCATGGACACGCCGCGGATGATCTTCAC CAACTTCTGCCAGGCGGTGTCCGCCTACACGGACCAGCAGCCCATGACTC CCAGTTGCGCCGCAGGCGGTCCCTTGGAAGGGATTTGGGGTGCTCCACCC CAGCGGGAAAGGAGACTTAATCCTAGGCAGAACGTTCACATCGTGTGCAC GGGGAAGAGGCGCCAACAGCTGCTGCGACGCCTTCTTCCGAGGAGCAGTT ACCATCTGGACCTGTTCGGAATCCACCAGGGTAGACAGAACCTCACCCTG CGACTGGCCAGCAGCCAGGTGAACTTTAACCGCACCCAACCTCTGGCCCT GAAGCAGCAGGCTCTGATGCAACTCAAGATCGGTGGACAGCACGGGAAGC AGGTGTACAGCTTCAAGGTTCCGCAGACGACTCGCCAGCTGGGGGAGCCG TTCATGAGGCACCTTTTGATCCCTTGCTCGGGCAGCGAAATCCGGGTGAA GCTGCTACGGCAACGCAGCGAGGTGGGGAAAACGGAGGCCTTCTATAGTC CAACGTACATTCGGCAGAAGGGAGTCCTACCAGGGGAGCGCTATCTCATG CGGTTCGAGCCCAGCAACGATGACGAGGCGTTGCGAGCTCAGAAGGTCAT GGTGGCCCTGAGCAGCGAGGCTCTGTTCCGGGATTTGCCCGAGCTGCCGC AGAACACGACAGTCTTCAATGTGCGAACGCGGTGCAGCAGAGCCACCATT GCATGGAATGGCTCACCGGATGAACGGGAGCTGAGCTACTGCATCATAGT GTTCAACCTGCCGCAGCGCAATCGCAGCGTGGTGGACTTTACCAACTACT GCATGGACTTTGTGCCCAAGCGGGTGATGCAGTACAGATACTTCGAGTGG ATGACCTGCAGGGAGAGGCAGCAGAGTCCCGACAACATCGAGACGGAGAC CATACTGAACCTGATGCCGGGTTCCAGCTACCTGGTCTACGTAACGGCCA ACCTGAGCATGGGCAAGCCGCTGCCCTACCAGGCGCTGACCCTCCACATG GCCAGTCAGTGCCTGGACGGATCGCACGAGTCCTTCTACTAAGCGCTACC AGTGGTGGTCGTAATCCCCCAATCCAAACCCATACCCAAAGCTTCGCTGC ATTTTCGAATACAAACACTGAACTATCCGTCGTTGTAAAGCTACCTTATC CACTACGATTACTACACTATCCTACAAAAAACTATGCTGGTTAAAAGACT ATACACCTAGCTCCATATACTATATATATATATACAATATCGAGGCGTGT GTTGTGTGGGCGAGTGAGTGTGTGCGTGTGACTTCTGATTGAGTTGCCAT TTGATTCCAAGTATTTTCGAGTGCTTAGTTTTGTAATTTGTAGCTAGCCG TTAATGTTTGTATAAACTGTTTCATTGGTTTCCCACTCCGCTTTATTCGA TAAGCTCGTTTTCTAGATTTTAGCTTTAGCACTCTTAGTTTAATGTTTAA AGTTAGTTTCGCTGTTAAGTTTACACCGTAGTCGAGGCGTCTTGAGTAGT TCTTTTGTACATTAAGCTTACACTTAGCTCTACATTAGATATACCATGTC GAACCTACGAGTCTACGAACATACGAACATATATATGTGCGTTGAAAGCG TTGTATTTTTTGAAGCCGAACTTATGCAACCGAAAGGAGACAATAAACAA ATGTGCTATAAAGGACGAAAGTGTCGCAAATAAATGTGAGCCACTGCTAA AGAAGACCGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 20140279..20141120 | 1975..2809 | 4040 | 98.9 | Plus |
chr2R | 21145070 | chr2R | 20139135..20139817 | 1021..1703 | 3310 | 99 | Plus |
chr2R | 21145070 | chr2R | 20130634..20131038 | 282..686 | 1965 | 99 | Plus |
chr2R | 21145070 | chr2R | 20129299..20129579 | 1..281 | 1405 | 100 | Plus |
chr2R | 21145070 | chr2R | 20138818..20139070 | 770..1022 | 1265 | 100 | Plus |
chr2R | 21145070 | chr2R | 20140078..20140220 | 1834..1976 | 685 | 98.6 | Plus |
chr2R | 21145070 | chr2R | 20139885..20140019 | 1701..1835 | 630 | 97.8 | Plus |
chr2R | 21145070 | chr2R | 20138661..20138748 | 686..773 | 425 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 24254260..24255095 | 1975..2810 | 4165 | 99.9 | Plus |
2R | 25286936 | 2R | 24253119..24253801 | 1021..1703 | 3415 | 100 | Plus |
2R | 25286936 | 2R | 24244610..24245014 | 282..686 | 2025 | 100 | Plus |
2R | 25286936 | 2R | 24243263..24243543 | 1..281 | 1405 | 100 | Plus |
2R | 25286936 | 2R | 24252802..24253054 | 770..1022 | 1265 | 100 | Plus |
2R | 25286936 | 2R | 24254059..24254201 | 1834..1976 | 715 | 100 | Plus |
2R | 25286936 | 2R | 24253866..24254000 | 1701..1835 | 675 | 100 | Plus |
2R | 25286936 | 2R | 24252645..24252732 | 686..773 | 440 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 1272..1325 | 318..370 | 141 | 75.9 | Plus |
TAHRE | 10463 | TAHRE OSV 10463bp | 7340..7408 | 319..388 | 130 | 70.4 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..802 | 411..565 | 125 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2848 | 471..395 | 124 | 62.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 20129299..20129579 | 1..281 | 100 | -> | Plus |
chr2R | 20130634..20131038 | 282..686 | 99 | -> | Plus |
chr2R | 20138662..20138747 | 687..772 | 98 | -> | Plus |
chr2R | 20138821..20139070 | 773..1022 | 100 | -> | Plus |
chr2R | 20139137..20139815 | 1023..1701 | 98 | -> | Plus |
chr2R | 20139886..20140019 | 1702..1835 | 97 | -> | Plus |
chr2R | 20140080..20140220 | 1836..1976 | 98 | -> | Plus |
chr2R | 20140281..20141120 | 1977..2809 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nord-RA | 1..1764 | 379..2142 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nord-RA | 1..1764 | 379..2142 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nord-RA | 1..1764 | 379..2142 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nord-RA | 1..2809 | 1..2809 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nord-RA | 9..2817 | 1..2809 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nord-RA | 9..2817 | 1..2809 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24243263..24243543 | 1..281 | 100 | -> | Plus |
2R | 24244610..24245014 | 282..686 | 100 | -> | Plus |
2R | 24252646..24252731 | 687..772 | 100 | -> | Plus |
2R | 24252805..24253054 | 773..1022 | 100 | -> | Plus |
2R | 24253121..24253799 | 1023..1701 | 100 | -> | Plus |
2R | 24253867..24254000 | 1702..1835 | 100 | -> | Plus |
2R | 24254061..24254201 | 1836..1976 | 100 | -> | Plus |
2R | 24254262..24255094 | 1977..2809 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24243263..24243543 | 1..281 | 100 | -> | Plus |
2R | 24244610..24245014 | 282..686 | 100 | -> | Plus |
2R | 24252646..24252731 | 687..772 | 100 | -> | Plus |
2R | 24252805..24253054 | 773..1022 | 100 | -> | Plus |
2R | 24253121..24253799 | 1023..1701 | 100 | -> | Plus |
2R | 24253867..24254000 | 1702..1835 | 100 | -> | Plus |
2R | 24254061..24254201 | 1836..1976 | 100 | -> | Plus |
2R | 24254262..24255094 | 1977..2809 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24243263..24243543 | 1..281 | 100 | -> | Plus |
2R | 24244610..24245014 | 282..686 | 100 | -> | Plus |
2R | 24252646..24252731 | 687..772 | 100 | -> | Plus |
2R | 24252805..24253054 | 773..1022 | 100 | -> | Plus |
2R | 24253121..24253799 | 1023..1701 | 100 | -> | Plus |
2R | 24253867..24254000 | 1702..1835 | 100 | -> | Plus |
2R | 24254061..24254201 | 1836..1976 | 100 | -> | Plus |
2R | 24254262..24255094 | 1977..2809 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 20130786..20131066 | 1..281 | 100 | -> | Plus |
arm_2R | 20132133..20132537 | 282..686 | 100 | -> | Plus |
arm_2R | 20140169..20140254 | 687..772 | 100 | -> | Plus |
arm_2R | 20140328..20140577 | 773..1022 | 100 | -> | Plus |
arm_2R | 20140644..20141322 | 1023..1701 | 100 | -> | Plus |
arm_2R | 20141390..20141523 | 1702..1835 | 100 | -> | Plus |
arm_2R | 20141584..20141724 | 1836..1976 | 100 | -> | Plus |
arm_2R | 20141785..20142617 | 1977..2809 | 99 | Plus |
Translation from 378 to 2141
> FI20196.hyp MQRSTMLPGVELLLLFLLSTSLHAEISHLPMASNRIILDSTELLQNPLIQ DAGVPAARATPLPPQKCPSLQRYRKMLKDFDDLEDLYVDVPVHIALAERQ RKRFVLNLNDSTPLTIRFSAPVGRKMYYNQTGNPLRPAAVAPGPGVAVGS LVLPCALRGQYDLFVLARHSGALKVDALAEHPQHDWPLLNATHRIAIRTQ NRVRKREMIVKWERSKFDFHVMHYCLVIQRLSMDTPRMIFTNFCQAVSAY TDQQPMTPSCAAGGPLEGIWGAPPQRERRLNPRQNVHIVCTGKRRQQLLR RLLPRSSYHLDLFGIHQGRQNLTLRLASSQVNFNRTQPLALKQQALMQLK IGGQHGKQVYSFKVPQTTRQLGEPFMRHLLIPCSGSEIRVKLLRQRSEVG KTEAFYSPTYIRQKGVLPGERYLMRFEPSNDDEALRAQKVMVALSSEALF RDLPELPQNTTVFNVRTRCSRATIAWNGSPDERELSYCIIVFNLPQRNRS VVDFTNYCMDFVPKRVMQYRYFEWMTCRERQQSPDNIETETILNLMPGSS YLVYVTANLSMGKPLPYQALTLHMASQCLDGSHESFY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nord-PA | 587 | CG30418-PA | 1..587 | 1..587 | 3075 | 100 | Plus |
Translation from 378 to 2141
> FI20196.pep MQRSTMLPGVELLLLFLLSTSLHAEISHLPMASNRIILDSTELLQNPLIQ DAGVPAARATPLPPQKCPSLQRYRKMLKDFDDLEDLYVDVPVHIALAERQ RKRFVLNLNDSTPLTIRFSAPVGRKMYYNQTGNPLRPAAVAPGPGVAVGS LVLPCALRGQYDLFVLARHSGALKVDALAEHPQHDWPLLNATHRIAIRTQ NRVRKREMIVKWERSKFDFHVMHYCLVIQRLSMDTPRMIFTNFCQAVSAY TDQQPMTPSCAAGGPLEGIWGAPPQRERRLNPRQNVHIVCTGKRRQQLLR RLLPRSSYHLDLFGIHQGRQNLTLRLASSQVNFNRTQPLALKQQALMQLK IGGQHGKQVYSFKVPQTTRQLGEPFMRHLLIPCSGSEIRVKLLRQRSEVG KTEAFYSPTYIRQKGVLPGERYLMRFEPSNDDEALRAQKVMVALSSEALF RDLPELPQNTTVFNVRTRCSRATIAWNGSPDERELSYCIIVFNLPQRNRS VVDFTNYCMDFVPKRVMQYRYFEWMTCRERQQSPDNIETETILNLMPGSS YLVYVTANLSMGKPLPYQALTLHMASQCLDGSHESFY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11385-PA | 588 | GF11385-PA | 1..588 | 6..587 | 2427 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22954-PA | 582 | GG22954-PA | 1..582 | 6..587 | 2885 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20979-PA | 597 | GH20979-PA | 28..587 | 24..580 | 1811 | 62.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nord-PA | 587 | CG30418-PA | 1..587 | 1..587 | 3075 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21315-PA | 577 | GI21315-PA | 13..567 | 10..580 | 1784 | 61.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19995-PA | 577 | GL19995-PA | 18..577 | 24..587 | 2286 | 75 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15831-PA | 577 | GA15831-PA | 18..577 | 24..587 | 2285 | 75.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11848-PA | 1037 | GM11848-PA | 1..279 | 2..280 | 1461 | 97.5 | Plus |
Dsec\GM11848-PA | 1037 | GM11848-PA | 379..471 | 349..441 | 488 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11846-PA | 563 | GD11846-PA | 1..563 | 6..587 | 2935 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21584-PA | 582 | GJ21584-PA | 19..572 | 20..580 | 1793 | 63 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15783-PA | 596 | GK15783-PA | 29..596 | 24..587 | 2146 | 71.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14391-PA | 583 | GE14391-PA | 1..583 | 6..587 | 2855 | 95 | Plus |