Clone FI20236 Report

Search the DGRC for FI20236

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:202
Well:36
Vector:pFlc-1
Associated Gene/TranscriptCG8243-RA
Protein status:FI20236.pep: gold
Sequenced Size:2422

Clone Sequence Records

FI20236.complete Sequence

2422 bp assembled on 2012-04-18

GenBank Submission: BT133474.1

> FI20236.complete
CTTTACCGCCACACGGTCCCACTGGACGCATCACTTTTTCGGTAGCAAAA
ACTTGTAGAAAATTGTCAATTCAATTCGCTGGTAGTTGTATATCCATGTG
AAGCAGAGATAAGCTCCGCCAACTCTACCCGTCGCCCACGCCACGTCGCA
CAGTTGCGCCCCGCCACAAATATCGAAACCAGGCCTCACAGACCGCAAGC
ATACCCCAAAATGAGCTCCTCGAATGCGGGACAGCGCACGAAGCTAATTC
AGGAGAAGTGCCAGACCCTCCTGACGCAGATGCTCCGCGACGAGGACAAC
AAGTACTGCGTGGACTGCGATGCCAAGGGTCCGCGCTGGGCCTCCTGGAA
CCTGGGCATGTTTCTCTGCATCCGCTGCGCCGGCATCCATCGCAATCTGG
GCGTGCACATATCGCGCGTCAAGTCCGTCAACCTGGACACTTGGACGCCA
GAGCAGGTGATCTCGCTGCAGCAGATGGGAAACTCGCGGGCTCGCGCCGT
CTACGAGGCGCAGCTGCCGGACGGCTTCCGTCGCCCGCAGACGGACACAG
CGCTGGAGAATTTCATCCGGGCCAAGTACGAGCACAAGAAGTACCTGGCC
CGCGAGTGGGTGCCTCCCTCGCCGCCGAAAGTGGACTGGGCCAAGGAGAT
CGACGAGGAGCTTGAGCGCCAGAAGCGCAAGAAGAAGAGCACGCAGGCCC
AGGCCACTTTGGGCCTGGCTGGAGTGGCCGGTGGCAGCGGCGACAAGCGC
CTGTCCGGGTCATCTGCGTCGGCGCTCAAGAACACCCCCCTGCCCGCGCC
GCTTCCAAAGCCGAAACCCAACCAGGTCGGCGGCTGCAGCCCAAAGACGA
CGCAACGCGTCCAGCTGAACAGCAGCGGCGTTAGCAGTGCCGGCGAAAGC
GACCTCTTGGGACTGTCCTCGCCCACCAAGCCCATTGTCGCGACCAATGC
CAGCCAAGACCTGCAAAACGAAAGTTTCACCAGCTTTCTCAGCGCCGAAT
CGATTGCCGGCCAGCCGGATAAGCCGATTGGCAGCAACGGCGACGCCGCC
AATTTGATGGGCTCGAAGCCGAACTCGCTGGCACAAGAGGAGCAGGACTT
CTTCAACCAGGGCTCACTGGGCGCCGGCGGCAACGAGAAGGATCAGTCTG
GCAAGATGTCCAAGGACAGCATTCTGGCGCTGTACGGCAGCGCGCCAGCC
ACCCACAACCCCCAGATGAACTTTGGCGGCTTCACGGGCATGGCCCCAGG
CGGCTATATGCACCAGCAGCAGCAACAGCAGATCCCCCACCAGTTTATGA
CACCGCCGAACTCGGTGAGCATGTATAATTCGCCAGTTATGGCTGCACCG
AATGCGTTCAGCAATGCTGCCATCAGCAGTGCCACTGCGATGAGCATGGG
CGGCTCCCATGGCTTTACTGGAGCCCAGTTTCCCAGCACCGGGGGCAGTC
CCTATGCTGCCGCAGGCCAGGCAGCTGCAACAAATCTTATGCAAACGAAC
CAGAGCATTCTCAGTGGGATGCCGCTCTTTGGAGCTGTTCCGCAACAGCA
GCAGCAACATCAGCAGCAGCTTCAGCAGCAACATCACCCACAGCTTGGCG
GCCTCTCCATGAACTTAATGCAGCCCCTGCCCAGTGGGCTGAACATTGGC
CAACCGCCACAAGGAGCGGGCGGATTTGCCGCAACGGGGCCCACCACCTC
CTCAGTACCGTCAAATCTGAACCAGCAGTTTGGGAATCTTAATATCGGTA
ATGTGTGGCAATAAATACGCGGTGTATTTATGTAGTTGTATTCCTTTAAT
TAATTGTAAGACACGAGTGTTCGGTTCGTCTCGGTGTTGCAACATGTGTG
TGTGAGACGGCGATGCTTGTTTATATACATTCGATTTATACAACAACTTG
CCAATTTAGTTAGTTGTCCTATTCGTGTTCGTAGAAGAATTCATTGTCGA
GCAAGCCACTGTATTAAACGATGTTCATGTCCATGTCCATCTCCATGTCC
ACCAGGAATCGCGTCTGCTCGTCTAAATCTATTCCAATTAAATCATAAAA
GGTACATACATACGCGTGTAACACCCAACTACTTAAAATTGAAAATTGAA
CCACAGAACGTAATGCACTTTCCAATCAAATGTACATGTTATTTTTCAAC
ATTAGCTAGGTATTTGATACGCATGCATTCAAAATCGTCCACGCCAGGGT
ACGAATGTAAGGTGTAGACTTCTGGCGCAGTACTTTTTAAATGCTTGATA
TCCTTAAGAACTTATTCACGCCTGTTTGTCAATGTGAATCTAAAATATCA
TGGCGGGTTGTCAACGGATTTATTGTATTCGATTCTTAAGTTGCTATGTC
TAAGGAAGAAATCAAACCACTTCGAACTGTGTAATAATAAAATATTCAGA
CAATTATAAAAAAAAAAAAAAA

FI20236.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4810818..4812895 328..2405 10390 100 Plus
chr2R 21145070 chr2R 4810339..4810668 1..330 1620 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8923267..8925344 328..2405 10390 100 Plus
2R 25286936 2R 8922788..8923117 1..330 1635 99.7 Plus
Blast to na_te.dros performed 2019-03-15 13:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6803..6857 1540..1594 167 78.2 Plus

FI20236.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:52:45 Download gff for FI20236.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4810339..4810666 1..328 99 -> Plus
chr2R 4810819..4812897 329..2407 97   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-04-18 11:58:45 Download gff for FI20236.complete
Subject Subject Range Query Range Percent Splice Strand
CG8243-RA 1..1554 211..1764 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:14:07 Download gff for FI20236.complete
Subject Subject Range Query Range Percent Splice Strand
CG8243-RA 1..1554 211..1764 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:42:19 Download gff for FI20236.complete
Subject Subject Range Query Range Percent Splice Strand
CG8243-RA 1..1554 211..1764 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-18 11:58:45 Download gff for FI20236.complete
Subject Subject Range Query Range Percent Splice Strand
CG8243-RA 1..2407 1..2407 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:14:07 Download gff for FI20236.complete
Subject Subject Range Query Range Percent Splice Strand
CG8243-RA 4..2410 1..2407 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:42:19 Download gff for FI20236.complete
Subject Subject Range Query Range Percent Splice Strand
CG8243-RA 4..2410 1..2407 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:52:45 Download gff for FI20236.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8922788..8923115 1..328 99 -> Plus
2R 8923268..8925346 329..2407 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:52:45 Download gff for FI20236.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8922788..8923115 1..328 99 -> Plus
2R 8923268..8925346 329..2407 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:52:45 Download gff for FI20236.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8922788..8923115 1..328 99 -> Plus
2R 8923268..8925346 329..2407 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:14:07 Download gff for FI20236.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4810293..4810620 1..328 99 -> Plus
arm_2R 4810773..4812851 329..2407 99   Plus

FI20236.hyp Sequence

Translation from 210 to 1763

> FI20236.hyp
MSSSNAGQRTKLIQEKCQTLLTQMLRDEDNKYCVDCDAKGPRWASWNLGM
FLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVISLQQMGNSRARAVYEA
QLPDGFRRPQTDTALENFIRAKYEHKKYLAREWVPPSPPKVDWAKEIDEE
LERQKRKKKSTQAQATLGLAGVAGGSGDKRLSGSSASALKNTPLPAPLPK
PKPNQVGGCSPKTTQRVQLNSSGVSSAGESDLLGLSSPTKPIVATNASQD
LQNESFTSFLSAESIAGQPDKPIGSNGDAANLMGSKPNSLAQEEQDFFNQ
GSLGAGGNEKDQSGKMSKDSILALYGSAPATHNPQMNFGGFTGMAPGGYM
HQQQQQQIPHQFMTPPNSVSMYNSPVMAAPNAFSNAAISSATAMSMGGSH
GFTGAQFPSTGGSPYAAAGQAAATNLMQTNQSILSGMPLFGAVPQQQQQH
QQQLQQQHHPQLGGLSMNLMQPLPSGLNIGQPPQGAGGFAATGPTTSSVP
SNLNQQFGNLNIGNVWQ*

FI20236.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8243-PA 517 CG8243-PA 1..517 1..517 2709 100 Plus
CenB1A-PB 598 CG6742-PB 156..267 23..129 248 41.1 Plus
CenB1A-PA 828 CG6742-PA 386..497 23..129 248 41.1 Plus
CenG1A-PC 763 CG31811-PC 482..583 30..129 233 42.7 Plus
CenG1A-PA 927 CG31811-PA 646..747 30..129 233 42.7 Plus

FI20236.pep Sequence

Translation from 210 to 1763

> FI20236.pep
MSSSNAGQRTKLIQEKCQTLLTQMLRDEDNKYCVDCDAKGPRWASWNLGM
FLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVISLQQMGNSRARAVYEA
QLPDGFRRPQTDTALENFIRAKYEHKKYLAREWVPPSPPKVDWAKEIDEE
LERQKRKKKSTQAQATLGLAGVAGGSGDKRLSGSSASALKNTPLPAPLPK
PKPNQVGGCSPKTTQRVQLNSSGVSSAGESDLLGLSSPTKPIVATNASQD
LQNESFTSFLSAESIAGQPDKPIGSNGDAANLMGSKPNSLAQEEQDFFNQ
GSLGAGGNEKDQSGKMSKDSILALYGSAPATHNPQMNFGGFTGMAPGGYM
HQQQQQQIPHQFMTPPNSVSMYNSPVMAAPNAFSNAAISSATAMSMGGSH
GFTGAQFPSTGGSPYAAAGQAAATNLMQTNQSILSGMPLFGAVPQQQQQH
QQQLQQQHHPQLGGLSMNLMQPLPSGLNIGQPPQGAGGFAATGPTTSSVP
SNLNQQFGNLNIGNVWQ*

FI20236.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12215-PA 507 GF12215-PA 5..507 8..517 1885 79.3 Plus
Dana\GF14267-PA 932 GF14267-PA 651..752 30..129 251 46.1 Plus
Dana\GF16981-PA 824 GF16981-PA 393..498 30..130 244 40.6 Plus
Dana\GF11212-PA 1157 GF11212-PA 441..560 30..147 230 36.9 Plus
Dana\GF23451-PA 564 GF23451-PA 2..98 6..101 215 40.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23397-PA 513 GG23397-PA 1..513 1..517 2349 93.6 Plus
Dere\GG11190-PA 828 GG11190-PA 393..498 30..130 259 41.5 Plus
Dere\GG23894-PA 927 GG23894-PA 646..747 30..129 243 42.7 Plus
Dere\GG10676-PA 1155 GG10676-PA 439..558 30..147 223 36.1 Plus
Dere\GG13175-PA 550 GG13175-PA 10..98 14..101 213 40.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23110-PA 533 GH23110-PA 1..533 1..517 1517 65.1 Plus
Dgri\GH23954-PA 847 GH23954-PA 392..497 30..130 253 41.5 Plus
Dgri\GH11124-PA 948 GH11124-PA 663..764 30..129 241 45.3 Plus
Dgri\GH19987-PA 1157 GH19987-PA 448..567 30..147 218 35.8 Plus
Dgri\GH14809-PA 571 GH14809-PA 26..98 30..101 203 46.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8243-PA 517 CG8243-PA 1..517 1..517 2709 100 Plus
CenB1A-PB 598 CG6742-PB 156..267 23..129 248 41.1 Plus
CenB1A-PA 828 CG6742-PA 386..497 23..129 248 41.1 Plus
CenG1A-PC 763 CG31811-PC 482..583 30..129 233 42.7 Plus
CenG1A-PA 927 CG31811-PA 646..747 30..129 233 42.7 Plus
CenG1A-PB 995 CG31811-PB 714..815 30..129 233 42.7 Plus
Asap-PC 1127 CG30372-PC 439..542 30..131 203 40.6 Plus
Asap-PD 1143 CG30372-PD 439..542 30..131 203 40.6 Plus
Asap-PB 1155 CG30372-PB 439..542 30..131 203 40.6 Plus
ArfGAP3-PE 513 CG6838-PE 10..97 14..100 196 40.9 Plus
ArfGAP3-PF 514 CG6838-PF 10..97 14..100 196 40.9 Plus
ArfGAP3-PG 549 CG6838-PG 10..97 14..100 196 40.9 Plus
ArfGAP3-PC 552 CG6838-PC 10..97 14..100 196 40.9 Plus
ArfGAP3-PB 552 CG6838-PB 10..97 14..100 196 40.9 Plus
ArfGAP3-PA 552 CG6838-PA 10..97 14..100 196 40.9 Plus
ArfGAP3-PH 553 CG6838-PH 10..97 14..100 196 40.9 Plus
drongo-PH 517 CG3365-PH 27..515 30..500 181 22.1 Plus
ArfGAP1-PB 448 CG4237-PB 5..100 16..111 175 33.3 Plus
ArfGAP1-PA 468 CG4237-PA 5..100 16..111 175 33.3 Plus
drongo-PI 514 CG3365-PI 27..491 30..480 170 22 Plus
Git-PA 731 CG16728-PA 49..186 33..154 170 31.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18933-PA 517 GI18933-PA 1..517 1..517 1700 70.2 Plus
Dmoj\GI23022-PA 832 GI23022-PA 392..497 30..130 258 41.5 Plus
Dmoj\GI12625-PA 949 GI12625-PA 667..768 30..129 243 45.6 Plus
Dmoj\GI20274-PA 1170 GI20274-PA 441..560 30..147 226 36.9 Plus
Dmoj\GI13910-PA 557 GI13910-PA 26..98 30..101 206 47.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11678-PA 523 GL11678-PA 1..523 1..517 1976 80.1 Plus
Dper\GL13665-PA 830 GL13665-PA 392..497 30..130 255 41.5 Plus
Dper\GL21243-PA 903 GL21243-PA 612..723 20..129 243 44 Plus
Dper\GL17382-PA 1173 GL17382-PA 441..560 30..147 224 36.9 Plus
Dper\GL18121-PA 367 GL18121-PA 1..98 1..101 211 39.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20924-PA 523 GA20924-PA 1..523 1..517 1965 79.5 Plus
Dpse\GA19825-PA 830 GA19825-PA 392..497 30..130 255 41.5 Plus
Dpse\GA16495-PA 960 GA16495-PA 669..780 20..129 244 44 Plus
Dpse\GA15795-PA 1173 GA15795-PA 441..560 30..147 225 36.9 Plus
Dpse\GA19895-PA 573 GA19895-PA 1..98 1..101 214 39.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21077-PA 432 GM21077-PA 87..432 179..517 1374 85.6 Plus
Dsec\GM21077-PA 432 GM21077-PA 1..121 1..121 690 100 Plus
Dsec\GM26489-PA 828 GM26489-PA 393..498 30..130 265 42.5 Plus
Dsec\GM20723-PA 700 GM20723-PA 439..558 30..147 222 36.1 Plus
Dsec\GM22084-PA 554 GM22084-PA 10..98 14..101 213 40.4 Plus
Dsec\GM24658-PA 471 GM24658-PA 5..100 16..111 186 33.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10613-PA 542 GD10613-PA 1..542 1..517 2656 93.9 Plus
Dsim\GD21002-PA 828 GD21002-PA 393..498 30..130 264 42.5 Plus
Dsim\GD23935-PA 927 GD23935-PA 646..747 30..129 244 42.7 Plus
Dsim\GD12059-PA 567 GD12059-PA 10..98 14..101 212 40.4 Plus
Dsim\GD12722-PA 471 GD12722-PA 5..100 16..111 186 33.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21305-PA 520 GJ21305-PA 1..520 1..517 1705 70.6 Plus
Dvir\GJ24615-PA 833 GJ24615-PA 392..497 30..130 248 40.6 Plus
Dvir\GJ18155-PA 948 GJ18155-PA 668..769 30..129 248 46.2 Plus
Dvir\GJ20227-PA 1163 GJ20227-PA 442..561 30..147 221 36.1 Plus
Dvir\GJ13704-PA 561 GJ13704-PA 10..98 14..101 205 38.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22097-PA 533 GK22097-PA 1..533 1..517 1533 67 Plus
Dwil\GK14415-PA 823 GK14415-PA 393..501 30..138 262 42.2 Plus
Dwil\GK15018-PA 959 GK15018-PA 673..775 30..130 250 45.2 Plus
Dwil\GK23159-PA 1157 GK23159-PA 439..558 30..147 231 37.7 Plus
Dwil\GK17446-PA 575 GK17446-PA 7..95 14..101 213 40.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19238-PA 509 GE19238-PA 1..509 1..517 2578 95.2 Plus
Dyak\GE10356-PA 828 GE10356-PA 393..498 30..130 259 41.5 Plus
Dyak\GE18693-PA 927 GE18693-PA 646..747 30..129 244 42.7 Plus
Dyak\GE23312-PA 1155 GE23312-PA 439..558 30..147 223 36.1 Plus
Dyak\GE19496-PA 549 GE19496-PA 10..98 14..101 216 40.4 Plus