Clone FI20283 Report

Search the DGRC for FI20283

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:202
Well:83
Vector:pFlc-1
Associated Gene/TranscriptInr-a-RB
Protein status:FI20283.pep: gold
Sequenced Size:2662

Clone Sequence Records

FI20283.complete Sequence

2662 bp assembled on 2012-04-30

GenBank Submission: BT133501.1

> FI20283.complete
ACTTTTTAAGTGTAAGTCATCAAAAATACATCGCAGTTGTTACGTGAGAG
TTTTCAAAAGCTAATTTTTATATAGTAGCAGTGCTTTTGTGAAATTTTTT
CCTCGCAAAAGTGTCTGGCAGTGATTGTACAAATGTATTAGCTTAAAAAG
TCGAAACATAGCAACTGCGACTACTTCAAACCAAATAACTTGATCAATAT
CCGGATCAAGATCTGGAATACAGAGTCCACAATGGAGCAGCTATTTCAGA
ATTACCGCGACGATGAGCGAAGGATCGGCGAGGAGTATCTGTCAAGTCTC
CAGGACCTCAACTGCAACAGCAAGCCATTGATCAATATGCTCACGATGCT
TGCCGAGGAGAACATCAACTACGCCCACATCATAGTTAAAGTGGTGGAAT
ATTACATCAGCCAGGTGGCGCCCGAATTTAAATTGCCCATACTATATTTA
ATTGATTCGATAGTAAAGAATGTGAAAAGCAGCTACGTCCAATTGTTTGG
ACAGTGCATAGTCAACATATTCCTCCACGCCTTCGAATCGGTCCAGCACT
CACAGTCGCAGGTTTTGGAAAAGGTGCGGGAACGCATGTATGCCCTGCGT
CAGACCTGGAACGAGGTGTTCCCGCCATCCAAGATGTACGCGCTGGACGT
TAAGGTGAAGCGCCTAGATAACAACTGGCCCATTACTGCCAAACAGCCAA
CTAACAAAATTCACGTCAATCCGGCCATTCATGTTAATCCGGATTTCTTA
AAACCGGGTTTGGTTCCTGGGATGCCTGGTAACCCCACAATCACCAGCGA
CATGGAGGAGATTTTGCAAGCAAAAACTCGTGAGTTGCTGGAGCTCAAGA
AGCGCAAACTGGAACTGGAGCTGGAGCAAACCAAAAAGCATTTAGAGGAG
CAGGAGCGTCAGCTGACCCAAACCACGGACGCGATGGTTGGAGCACCGAT
TATTATGCCTGCTCCCACTCCAGCAGCAATTTGTCCGCCAATCACGGATC
CCGGTATAGCAGTGCATAATCAACGAGCTCCAGGGGTAATGGGCAATGTT
GGTCCCGTAATGCATAACATGCCAGTGGCTCCGCAGCTTTTTGCGAATAA
ACCAAAAGTCCATCCTGTCAATCCGGCACTGTTGAACTCGGTGCGCCAAC
GAGATCCGAGACTAGCCCGCCAGATGCATGCGGCATCCTCACATCCAGCT
GCGCCGGCACGAAACGATCCTCGGCTGGAGGCCAAATCTAGCTCCTCACA
GAAGTCTAGTCGGTCGCGCAGCAAATCGCCTGTGCGCAACAGCAGCAGTC
GGTCTGGAAAGAGTGGAAGCTCTAGCCACAGCAGTTCGTCGAGCCGCAAG
CGAAGTGAGTCAAAGAGCTCCACGACTTCCTCATCTTCGTCGAGCTCTGA
TGTTCGGCACAAGGGTGTCACTGCAAGCAGCTCCAACCAGCCAACAGTTA
AGCGGTCCGGTAAGATCACGTCTAAGGATTCGGATCGCTATGTTCGCAAT
GGATCTCCTTTGGGATCCGCGAAACGCAAGAGCAGCTCACCAAGTAGCTC
GCCCTCCAAATCCAAGCGCAGCACGTCGCACAAGTCATCCTCGTCGCGAG
GAAAGACCTCTTCTCTGCGTTCCCGCAGTCGATCTCCAGTTTTTATGGAC
GTCGACCTACGCACCGGAGTTCGAAGCAAGTCACCAGAGAGCAGGGCAGT
TGCCCCATCATCCTTACCACTGGCGGGCGCATCACTACCAGCATCAGCTA
AAGCACCAAAAGATTTAGAGAAACGTAAGAAACAACTTTTAATTCTAATC
TCACACTTGTTAGCGAACAACCAAGTCTGGTTTGACTTGGAACCTAGAGC
TACAGACAGCTTAGTTGAAAATTTAGAATATATCAACCAGAATGGCGGCA
CTCGATGGCTTAGGTTGGTGGAAGGGCGGGTTATTGGGACCGTATGTGGT
TGACAAGTGGAAATCTTCTGCTCAACTCTAACCGAAGTCTGTGATAAGTA
CAATTGTGATACCAAAGTGGCGTTCCCAACAATGGAATGTGTTAAACTAT
AGATTTTGCTTGAATTCTGATAAATATCATATTAAATTACTACTGAACAA
CAATTTGAGATGGTTATAAAAGCGACCATTGCCAGTATTACTTACTGATC
AACATTATTGACAAAGATGTCTATAAAAAGATTCCACTAACTGCTGAAAT
TTGGTTCTTCGTTCGTTGTTTTTTGGCCCAGTTTATTGGAAGCAGGAATT
TGTTTCGTTTTAAAGCAACTAACCGCCAACAATTAATTAAATATTTATGA
TATATTTTTTCTTATAAATACTTAAGCGTCGTTTAGAAAAATCTAACAAG
TTTTATCGAATCAAAAGCAAAGTGTAAATAAAATGTGTTGAAAACCTTTT
GCATTCCAAGTTGTTTTAATTGATGCAAAATGTAGCCAGGTGCCGCCTTT
GGTATGATTTTGAAAATGATTTTCGATTTGTGAATGTCAAAACAATAAGT
ACAACTAAATTGAAAGCGAACCAAAAATAAACCAAAATGATTTAACTGTG
AAGTATTTTTTGTACCTTAAACTTCCTATTGATAAACAATTATTAGATGA
AGAGAAACTCAATAAAATAAAGACTGCAGTTTTAATTTCCTGTTAGAAAA
AAAAAAAAAAAA

FI20283.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10753938..10755500 2645..1084 7735 99.8 Minus
chr2R 21145070 chr2R 10755559..10755889 1086..756 1640 99.7 Minus
chr2R 21145070 chr2R 10757373..10757640 416..149 1340 100 Minus
chr2R 21145070 chr2R 10755953..10756170 757..540 1090 100 Minus
chr2R 21145070 chr2R 10758246..10758392 150..4 735 100 Minus
chr2R 21145070 chr2R 10756231..10756361 542..412 655 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14866612..14868174 2645..1084 7765 99.9 Minus
2R 25286936 2R 14868233..14868563 1086..756 1640 99.7 Minus
2R 25286936 2R 14870047..14870314 416..149 1340 100 Minus
2R 25286936 2R 14868627..14868844 757..540 1090 100 Minus
2R 25286936 2R 14870920..14871066 150..4 735 100 Minus
2R 25286936 2R 14868905..14869035 542..412 655 100 Minus
Blast to na_te.dros performed 2019-03-15 13:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
transib4 2656 transib4 TRANSIB4 2656bp 57..161 2619..2510 123 63.4 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6891..6990 2277..2380 123 60.6 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 7110..7215 2389..2281 115 61.6 Minus

FI20283.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:56:01 Download gff for FI20283.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10753937..10755497 1087..2646 97 <- Minus
chr2R 10755559..10755888 757..1086 99 <- Minus
chr2R 10755954..10756169 541..756 100 <- Minus
chr2R 10756233..10756358 415..540 100 <- Minus
chr2R 10757375..10757638 151..414 100 <- Minus
chr2R 10758246..10758394 1..150 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-04-30 10:02:28 Download gff for FI20283.complete
Subject Subject Range Query Range Percent Splice Strand
Pcf11-RB 1..1722 232..1953 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:16:27 Download gff for FI20283.complete
Subject Subject Range Query Range Percent Splice Strand
Inr-a-RB 1..1722 232..1953 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:44:34 Download gff for FI20283.complete
Subject Subject Range Query Range Percent Splice Strand
Inr-a-RB 1..1722 232..1953 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:02:28 Download gff for FI20283.complete
Subject Subject Range Query Range Percent Splice Strand
Pcf11-RB 3..2646 1..2644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:16:27 Download gff for FI20283.complete
Subject Subject Range Query Range Percent Splice Strand
Inr-a-RB 4..2647 1..2644 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:44:34 Download gff for FI20283.complete
Subject Subject Range Query Range Percent Splice Strand
Inr-a-RB 4..2647 1..2644 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:56:01 Download gff for FI20283.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14870920..14871068 1..150 99   Minus
2R 14866611..14868171 1087..2646 99 <- Minus
2R 14868233..14868562 757..1086 99 <- Minus
2R 14868628..14868843 541..756 100 <- Minus
2R 14868907..14869032 415..540 100 <- Minus
2R 14870049..14870312 151..414 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:56:01 Download gff for FI20283.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14870920..14871068 1..150 99   Minus
2R 14866611..14868171 1087..2646 99 <- Minus
2R 14868233..14868562 757..1086 99 <- Minus
2R 14868628..14868843 541..756 100 <- Minus
2R 14868907..14869032 415..540 100 <- Minus
2R 14870049..14870312 151..414 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:56:01 Download gff for FI20283.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14870920..14871068 1..150 99   Minus
2R 14866611..14868171 1087..2646 99 <- Minus
2R 14868233..14868562 757..1086 99 <- Minus
2R 14868628..14868843 541..756 100 <- Minus
2R 14868907..14869032 415..540 100 <- Minus
2R 14870049..14870312 151..414 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:16:27 Download gff for FI20283.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10754116..10755676 1087..2646 99 <- Minus
arm_2R 10755738..10756067 757..1086 99 <- Minus
arm_2R 10756133..10756348 541..756 100 <- Minus
arm_2R 10756412..10756537 415..540 100 <- Minus
arm_2R 10757554..10757817 151..414 100 <- Minus
arm_2R 10758425..10758573 1..150 99   Minus

FI20283.hyp Sequence

Translation from 231 to 1952

> FI20283.hyp
MEQLFQNYRDDERRIGEEYLSSLQDLNCNSKPLINMLTMLAEENINYAHI
IVKVVEYYISQVAPEFKLPILYLIDSIVKNVKSSYVQLFGQCIVNIFLHA
FESVQHSQSQVLEKVRERMYALRQTWNEVFPPSKMYALDVKVKRLDNNWP
ITAKQPTNKIHVNPAIHVNPDFLKPGLVPGMPGNPTITSDMEEILQAKTR
ELLELKKRKLELELEQTKKHLEEQERQLTQTTDAMVGAPIIMPAPTPAAI
CPPITDPGIAVHNQRAPGVMGNVGPVMHNMPVAPQLFANKPKVHPVNPAL
LNSVRQRDPRLARQMHAASSHPAAPARNDPRLEAKSSSSQKSSRSRSKSP
VRNSSSRSGKSGSSSHSSSSSRKRSESKSSTTSSSSSSSDVRHKGVTASS
SNQPTVKRSGKITSKDSDRYVRNGSPLGSAKRKSSSPSSSPSKSKRSTSH
KSSSSRGKTSSLRSRSRSPVFMDVDLRTGVRSKSPESRAVAPSSLPLAGA
SLPASAKAPKDLEKRKKQLLILISHLLANNQVWFDLEPRATDSLVENLEY
INQNGGTRWLRLVEGRVIGTVCG*

FI20283.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
Inr-a-PB 573 CG10228-PB 1..573 1..573 2906 100 Plus
Inr-a-PH 1839 CG10228-PH 1..515 1..515 2603 100 Plus
Inr-a-PE 1839 CG10228-PE 1..515 1..515 2603 100 Plus
Inr-a-PD 1953 CG10228-PD 1..520 1..520 2603 99.2 Plus
Inr-a-PG 1945 CG10228-PG 1..515 1..515 2603 100 Plus

FI20283.pep Sequence

Translation from 231 to 1952

> FI20283.pep
MEQLFQNYRDDERRIGEEYLSSLQDLNCNSKPLINMLTMLAEENINYAHI
IVKVVEYYISQVAPEFKLPILYLIDSIVKNVKSSYVQLFGQCIVNIFLHA
FESVQHSQSQVLEKVRERMYALRQTWNEVFPPSKMYALDVKVKRLDNNWP
ITAKQPTNKIHVNPAIHVNPDFLKPGLVPGMPGNPTITSDMEEILQAKTR
ELLELKKRKLELELEQTKKHLEEQERQLTQTTDAMVGAPIIMPAPTPAAI
CPPITDPGIAVHNQRAPGVMGNVGPVMHNMPVAPQLFANKPKVHPVNPAL
LNSVRQRDPRLARQMHAASSHPAAPARNDPRLEAKSSSSQKSSRSRSKSP
VRNSSSRSGKSGSSSHSSSSSRKRSESKSSTTSSSSSSSDVRHKGVTASS
SNQPTVKRSGKITSKDSDRYVRNGSPLGSAKRKSSSPSSSPSKSKRSTSH
KSSSSRGKTSSLRSRSRSPVFMDVDLRTGVRSKSPESRAVAPSSLPLAGA
SLPASAKAPKDLEKRKKQLLILISHLLANNQVWFDLEPRATDSLVENLEY
INQNGGTRWLRLVEGRVIGTVCG*

FI20283.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12082-PA 1971 GF12082-PA 1..502 1..496 1513 76.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22388-PA 1946 GG22388-PA 1..514 1..515 1948 89.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22985-PA 2093 GH22985-PA 1..334 1..332 1176 71.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
Pcf11-PB 573 CG10228-PB 1..573 1..573 2906 100 Plus
Pcf11-PH 1839 CG10228-PH 1..515 1..515 2603 100 Plus
Pcf11-PE 1839 CG10228-PE 1..515 1..515 2603 100 Plus
Pcf11-PD 1953 CG10228-PD 1..520 1..520 2603 99.2 Plus
Pcf11-PG 1945 CG10228-PG 1..515 1..515 2603 100 Plus
Pcf11-PF 1850 CG10228-PF 1..514 1..514 2598 100 Plus
Pcf11-PC 86 CG10228-PC 1..62 1..62 317 100 Plus
PNUTS-PA 628 CG33526-PA 283..479 335..514 213 36.4 Plus
PNUTS-PB 628 CG33526-PB 283..479 335..514 213 36.4 Plus
PNUTS-PE 1135 CG33526-PE 283..479 335..514 213 36.4 Plus
PNUTS-PD 1135 CG33526-PD 283..479 335..514 213 36.4 Plus
Mur89F-PC 2158 CG4090-PC 818..1021 318..517 172 28.9 Plus
Mur89F-PB 2159 CG4090-PB 818..1021 318..517 172 28.9 Plus
Ctr9-PA 1150 CG2469-PA 1002..1143 333..489 171 38.9 Plus
Ctr9-PB 1150 CG2469-PB 1002..1143 333..489 171 38.9 Plus
Mur89F-PC 2158 CG4090-PC 557..740 313..494 170 28.6 Plus
Mur89F-PB 2159 CG4090-PB 557..740 313..494 170 28.6 Plus
Top1-PD 970 CG6146-PD 36..189 316..467 168 33.5 Plus
Top1-PC 974 CG6146-PC 40..193 316..467 168 33.5 Plus
Top1-PA 974 CG6146-PA 40..193 316..467 168 33.5 Plus
Mur89F-PC 2158 CG4090-PC 812..946 336..466 167 37 Plus
Mur89F-PB 2159 CG4090-PB 812..946 336..466 167 37 Plus
Mur89F-PC 2158 CG4090-PC 604..741 336..469 162 33.3 Plus
Mur89F-PC 2158 CG4090-PC 793..941 320..468 162 30.9 Plus
Mur89F-PB 2159 CG4090-PB 604..741 336..469 162 33.3 Plus
Mur89F-PB 2159 CG4090-PB 793..941 320..468 162 30.9 Plus
CG9915-PC 820 CG9915-PC 198..376 310..500 158 31.8 Plus
CG9915-PB 820 CG9915-PB 198..376 310..500 158 31.8 Plus
PNUTS-PA 628 CG33526-PA 337..544 317..517 157 30.6 Plus
PNUTS-PB 628 CG33526-PB 337..544 317..517 157 30.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18953-PA 2052 GI18953-PA 1..335 1..333 1247 75 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17525-PA 1973 GL17525-PA 1..490 1..492 1560 73.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24192-PB 584 GA24192-PB 1..583 1..572 1687 69.3 Plus
Dpse\GA24192-PA 1971 GA24192-PA 1..490 1..492 1557 73.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20171-PA 1933 GM20171-PA 1..507 1..515 1818 91.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25648-PA 963 GD25648-PA 1..261 1..267 1286 90.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21559-PA 2061 GJ21559-PA 1..512 1..486 1323 65.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22121-PA 2009 GK22121-PA 1..495 1..515 1091 60.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12277-PA 1949 GE12277-PA 1..516 1..515 1991 89.9 Plus
Dyak\GE11305-PA 57 GE11305-PA 1..52 1..52 255 88.5 Plus