Clone FI20749 Report

Search the DGRC for FI20749

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:207
Well:49
Vector:pOT2
Associated Gene/TranscriptProsalpha4T2-RA
Protein status:FI20749.pep: gold
Sequenced Size:1220

Clone Sequence Records

FI20749.complete Sequence

1220 bp assembled on 2012-07-27

GenBank Submission: BT149849.1

> FI20749.complete
TACACTCCATAGTATTTCAAATAAGTAGCCCCACTTCAATGGCTCAGCGA
TACGATCGCGCGGTGACCATTTACTCACCCGACGGTCACCTGCTGCAGGT
GGAGTACGCCCAGGAGGCCGTCCGAAGGGGTTCCACTGTGATGGGTCTGC
GCACCAACAACGCCATTGTAATCGGCGTGGAGAAGCGCTCCGTGGGCGAC
TTGCAGGAGGAGCGCATGGTGCGCAAGATTTGCATGCTCGACGACCACGT
GGTGATGACTTTTTCGGGTCTCACCGCGGACGCACGGATCCTGGTAAGCC
GCGCCCAAATGGAGGCCCAGAGCCATCGTCTGAATTTCGAGAAGCCCACG
ACCGTGGAGTACATAACCCGATACATAGCCCAGCTGAAACAGAACTACAC
GCAGAGCAATGGGAGGCGTCCATTTGGATTGTCCTGTCTGGTTGGGGGCT
TCGACGAGGATGGCACTCCACACCTGTTCCAAACGGATCCCTCGGGCATC
TTCTACGAGTGGAGGGCCAACACCACCGGCCGCTCAAGCCAGCCGGTCCG
CGATTACATGGAGAAGCACGCGGACGAGATTCTGACCATCGCCGACGAGG
CAGCGGCCATCAAGCACATAGTCCGCACCCTGGTCAGCGTGTCCTCGCTC
AACCACACCCAAATGGAGGTGGCTGTGCTCAAGTACCGCCAGCCACTGCG
TATGATTGATCACCAGGTCCTGGCCGATCTGGAGCGAACCGTTCGCAGGG
AAATTGAAGACGAGGCCGAGGCCAGTCGGCGGCCCCGTGCTCCCTAGTTT
TGGCCGGCCACCCTGATCCATTCTGTTCGCCATGGCCCCTGGCCATTTTC
ATGACCAATCAAAAGTTGATAACCGGTCGTGCTCTCTTTTTCTGGGCAAT
TCAATTTCGGCCGGGGAGTTGGAGAAAAGTAATCAGCAGGAAAAATGTGT
AAAGCGGGCAAATCACTTAATTTGTCTCCAGGGCGTATTTGTTTACTTTA
TATCCCTCTCCGGCGTAGACGCGTACGCTCCTTTCAGGCCAACCAAGTTA
AAAAGTTTTAAGTGAAAATGCGAATTGAATTTGTAGAGGAAAAATAAGAA
AGTGCGCGCACACATGCAGAAAATGTTTGTCAATCGAGATGGTTTCTCTT
GATTGGGTTAATAAATTCCTAGATGCCAAGGAATGCTCCTTGATCCTGAT
GTAAAAAAAAAAAAAAAAAA

FI20749.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20386677..20387509 1202..370 4150 99.9 Minus
chr2R 21145070 chr2R 20387689..20387919 370..140 1155 100 Minus
chr2R 21145070 chr2R 20387983..20388122 140..1 700 100 Minus
chr3R 27901430 chr3R 16572462..16572906 510..66 425 73 Minus
chrX 22417052 chrX 16166331..16166525 174..368 390 80 Plus
chrX 22417052 chrX 16166592..16166751 370..529 305 79.4 Plus
chrX 22417052 chrX 16166131..16166218 51..138 245 85.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24500777..24501612 1205..370 4165 99.9 Minus
2R 25286936 2R 24501792..24502022 370..140 1155 100 Minus
2R 25286936 2R 24502086..24502225 140..1 700 100 Minus
3R 32079331 3R 20748547..20748991 510..66 425 73 Minus
X 23542271 X 16276630..16276824 174..368 390 80 Plus
X 23542271 X 16276891..16277050 370..529 305 79.4 Plus
X 23542271 X 16276430..16276517 51..138 245 85.2 Plus
Blast to na_te.dros performed on 2019-03-15 13:59:10 has no hits.

FI20749.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:59:55 Download gff for FI20749.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20386677..20387508 371..1202 99 <- Minus
chr2R 20387689..20387918 141..370 100 <- Minus
chr2R 20387983..20388122 1..140 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-07-27 14:44:00 Download gff for FI20749.complete
Subject Subject Range Query Range Percent Splice Strand
Pros28.1B-RA 1..759 39..797 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:19:58 Download gff for FI20749.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha4T2-RA 1..759 39..797 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:48:04 Download gff for FI20749.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha4T2-RA 1..759 39..797 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-27 14:43:59 Download gff for FI20749.complete
Subject Subject Range Query Range Percent Splice Strand
Pros28.1B-RA 10..1127 1..1118 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:19:58 Download gff for FI20749.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha4T2-RB 53..1254 1..1202 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:48:04 Download gff for FI20749.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha4T2-RB 53..1254 1..1202 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:59:55 Download gff for FI20749.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24500780..24501611 371..1202 99 <- Minus
2R 24501792..24502021 141..370 100 <- Minus
2R 24502086..24502225 1..140 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:59:55 Download gff for FI20749.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24500780..24501611 371..1202 99 <- Minus
2R 24501792..24502021 141..370 100 <- Minus
2R 24502086..24502225 1..140 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:59:55 Download gff for FI20749.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24500780..24501611 371..1202 99 <- Minus
2R 24501792..24502021 141..370 100 <- Minus
2R 24502086..24502225 1..140 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:19:58 Download gff for FI20749.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20389609..20389748 1..140 100   Minus
arm_2R 20388303..20389134 371..1202 99 <- Minus
arm_2R 20389315..20389544 141..370 100 <- Minus

FI20749.hyp Sequence

Translation from 2 to 796

> FI20749.hyp
HSIVFQISSPTSMAQRYDRAVTIYSPDGHLLQVEYAQEAVRRGSTVMGLR
TNNAIVIGVEKRSVGDLQEERMVRKICMLDDHVVMTFSGLTADARILVSR
AQMEAQSHRLNFEKPTTVEYITRYIAQLKQNYTQSNGRRPFGLSCLVGGF
DEDGTPHLFQTDPSGIFYEWRANTTGRSSQPVRDYMEKHADEILTIADEA
AAIKHIVRTLVSVSSLNHTQMEVAVLKYRQPLRMIDHQVLADLERTVRRE
IEDEAEASRRPRAP*

FI20749.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha4T2-PB 252 CG4569-PB 1..252 13..264 1285 100 Plus
Prosalpha4T2-PA 252 CG4569-PA 1..252 13..264 1285 100 Plus
Prosalpha4-PA 249 CG3422-PA 1..249 13..262 809 60.4 Plus
Prosalpha4T1-PA 249 CG17268-PA 1..249 13..262 726 56.3 Plus
Prosalpha2-PA 234 CG5266-PA 4..186 15..198 358 37.5 Plus

FI20749.pep Sequence

Translation from 2 to 796

> FI20749.pep
HSIVFQISSPTSMAQRYDRAVTIYSPDGHLLQVEYAQEAVRRGSTVMGLR
TNNAIVIGVEKRSVGDLQEERMVRKICMLDDHVVMTFSGLTADARILVSR
AQMEAQSHRLNFEKPTTVEYITRYIAQLKQNYTQSNGRRPFGLSCLVGGF
DEDGTPHLFQTDPSGIFYEWRANTTGRSSQPVRDYMEKHADEILTIADEA
AAIKHIVRTLVSVSSLNHTQMEVAVLKYRQPLRMIDHQVLADLERTVRRE
IEDEAEASRRPRAP*

FI20749.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11246-PA 252 GF11246-PA 1..248 13..260 1037 75.4 Plus
Dana\GF19028-PA 249 GF19028-PA 1..229 13..242 833 63.8 Plus
Dana\GF17957-PA 234 GF17957-PA 3..186 14..198 384 37.8 Plus
Dana\GF13117-PA 243 GF13117-PA 8..233 17..238 329 34.3 Plus
Dana\GF23090-PA 317 GF23090-PA 4..255 15..259 326 30.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19922-PA 252 GG19922-PA 1..252 13..264 1212 88.5 Plus
Dere\GG17945-PA 249 GG17945-PA 1..229 13..242 838 64.8 Plus
Dere\GG15180-PA 251 GG15180-PA 1..241 13..254 801 59 Plus
Dere\GG18927-PA 234 GG18927-PA 4..186 15..198 378 38 Plus
Dere\GG22074-PA 264 GG22074-PA 1..220 13..227 334 34.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12557-PA 249 GH12557-PA 1..227 13..240 827 64.5 Plus
Dgri\GH20892-PA 254 GH20892-PA 1..242 13..254 816 61.6 Plus
Dgri\GH13898-PA 234 GH13898-PA 4..186 15..198 381 38 Plus
Dgri\GH21393-PA 245 GH21393-PA 8..222 17..226 342 35.2 Plus
Dgri\GH20521-PA 263 GH20521-PA 1..218 13..227 328 33.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha4T2-PB 252 CG4569-PB 1..252 13..264 1285 100 Plus
Prosalpha4T2-PA 252 CG4569-PA 1..252 13..264 1285 100 Plus
Prosalpha4-PA 249 CG3422-PA 1..249 13..262 809 60.4 Plus
Prosalpha4T1-PA 249 CG17268-PA 1..249 13..262 726 56.3 Plus
Prosalpha2-PA 234 CG5266-PA 4..186 15..198 358 37.5 Plus
Prosalpha3-PA 264 CG9327-PA 1..257 13..262 335 30 Plus
Prosalpha6-PA 279 CG4904-PA 5..230 16..238 322 31.7 Plus
Prosalpha6-PB 279 CG4904-PB 5..230 16..238 322 31.7 Plus
Prosalpha5-PB 244 CG10938-PB 8..222 17..226 303 35.5 Plus
Prosalpha5-PA 244 CG10938-PA 8..222 17..226 303 35.5 Plus
Prosalpha3T-PA 251 CG1736-PA 1..176 13..188 300 37.3 Plus
Prosalpha6T-PA 289 CG5648-PA 5..222 16..234 291 32 Plus
Prosalpha7-PA 253 CG1519-PA 8..195 17..199 276 31.9 Plus
Prosalpha1-PB 244 CG18495-PB 9..235 17..242 244 27.8 Plus
Prosalpha1-PA 244 CG18495-PA 9..235 17..242 244 27.8 Plus
CG30382-PB 244 CG30382-PB 9..235 17..242 244 27.8 Plus
CG30382-PA 244 CG30382-PA 9..235 17..242 244 27.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18902-PA 253 GI18902-PA 4..241 17..254 874 67.2 Plus
Dmoj\GI11210-PA 249 GI11210-PA 1..227 13..240 824 63.6 Plus
Dmoj\GI18257-PA 254 GI18257-PA 4..241 13..250 767 56.7 Plus
Dmoj\GI24829-PA 234 GI24829-PA 4..186 15..198 384 38.6 Plus
Dmoj\GI18573-PA 245 GI18573-PA 8..219 17..223 340 35.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20413-PA 252 GL20413-PA 1..249 13..261 924 67.1 Plus
Dper\GL21346-PA 185 GL21346-PA 1..185 47..233 622 60.4 Plus
Dper\GL26115-PA 219 GL26115-PA 1..166 13..178 576 63.1 Plus
Dper\GL27312-PA 234 GL27312-PA 3..186 14..198 382 37.8 Plus
Dper\GL18993-PA 281 GL18993-PA 4..233 15..238 335 33.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25111-PA 252 GA25111-PA 1..249 13..261 924 67.1 Plus
Dpse\GA25292-PA 249 GA25292-PA 1..240 13..253 823 59.5 Plus
Dpse\GA17441-PA 249 GA17441-PA 1..229 13..242 822 63 Plus
Dpse\GA18772-PA 234 GA18772-PA 3..186 14..198 382 37.8 Plus
Dpse\GA21704-PA 262 GA21704-PA 1..255 13..262 326 29.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\Pros28.1B-PA 252 GM11825-PA 1..252 13..264 1325 97.6 Plus
Dsec\Pros28.1A-PA 251 GM23164-PA 1..244 13..257 772 58.1 Plus
Dsec\GM24033-PA 234 GM24033-PA 4..186 15..198 373 37.5 Plus
Dsec\GM18005-PA 281 GM18005-PA 4..228 15..234 336 32.3 Plus
Dsec\GM15792-PA 264 GM15792-PA 1..220 13..227 332 34.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Pros28.1B-PA 252 GD24946-PA 1..252 13..264 1332 98.4 Plus
Dsim\Pros28.1A-PA 251 GD20037-PA 1..244 13..257 777 58.1 Plus
Dsim\GD18834-PA 234 GD18834-PA 4..186 15..198 373 37.5 Plus
Dsim\GD23664-PA 281 GD23664-PA 4..228 15..234 336 32.3 Plus
Dsim\GD11553-PA 264 GD11553-PA 1..220 13..227 332 34.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20726-PA 251 GJ20726-PA 1..251 13..263 865 63.1 Plus
Dvir\Pros28.1B-PA 251 GJ19357-PA 3..250 16..263 836 61.7 Plus
Dvir\Pros28.1-PA 249 GJ18504-PA 1..229 13..242 835 63.9 Plus
Dvir\GJ24473-PA 234 GJ24473-PA 4..186 15..198 385 38.6 Plus
Dvir\GJ20367-PA 245 GJ20367-PA 7..222 16..226 339 35 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19681-PA 255 GK19681-PA 1..243 13..255 888 63.4 Plus
Dwil\GK25669-PA 249 GK25669-PA 1..230 13..243 830 63.6 Plus
Dwil\GK14404-PA 234 GK14404-PA 4..186 15..198 367 37 Plus
Dwil\GK22956-PA 262 GK22956-PA 1..239 13..252 325 32.7 Plus
Dwil\GK21413-PA 245 GK21413-PA 8..232 17..235 320 33.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11446-PA 252 GE11446-PA 1..252 13..264 1253 92.5 Plus
Dyak\GE17253-PA 249 GE17253-PA 1..229 13..242 850 65.7 Plus
Dyak\GE25043-PA 251 GE25043-PA 1..241 13..254 802 59.4 Plus
Dyak\GE26194-PA 234 GE26194-PA 4..186 15..198 376 38 Plus
Dyak\Pros35-PA 286 GE18906-PA 8..249 16..251 337 33.1 Plus