Clone FI21003 Report

Search the DGRC for FI21003

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:210
Well:3
Vector:pOT2
Associated Gene/TranscriptLa-RA
Protein status:FI21003.pep: gold
Sequenced Size:1498

Clone Sequence Records

FI21003.complete Sequence

1498 bp assembled on 2013-03-19

GenBank Submission: BT150066.1

> FI21003.complete
AAACCACTTTTCGTCACATATATTTTGAATTATAAGTTTTAGTTTGGCAT
GTTCTTGTTTTTGAATATCGTGCTAAAATGGCCGAAGTTGCTGAAACCCC
GAGTGTGGAAGCCCAGGAAGAGGTAGCACAGCCCGCCGAGGCGCAGGTGC
TGGAGGCGAAGAACGGCGACGCCAAGAAGGACCCGGCTCCCGCAGCAGAG
GAGGCCGCTGGCGGCTTCACCAAACAGGAGCGCGCCATAATCCGGCAGGT
AGAGTACTACTTCGGCGATGCCAATCTGAATCGGGACAAGTTTCTGCGCG
AGCAGATCGGCAAGAACGAGGACGGCTGGGTGCCCCTGTCGGTGCTCGTT
ACCTTCAAGAGATTGGCCTCCCTGTCCACGGACTTATCTGAGATCGTGGC
TGCCCTGAACAAATCCGAGGAGGGCCTCGTGGAGATTAGCGAAGACAAAC
TTAGCCTGCGTCGCCATCCGGAGCGTCCTATTCCAGAGCACAACGAAGAG
CGGCGCAAGGAGATCCAGGAACGGACCGCATACGCCAAGGGCTTCCCCCT
AGATTCGCAGATTAGCGAACTGCTCGACTTTGCTGCCAACTACGACAAAG
TGGTCAACCTGACCATGCGCAAGCACTATGACAAGCCCACCAAGTCGTAC
AAGTTCAAGGGCAGCATCTTCCTTACTTTCGAGACCAAGGACCAGGCAAA
GGCCTTCCTCGAACAGGAGAAGATCGTTTATAAGGAGCGCGAGCTGCTGC
GTAAATGGCAGGTGGACTACCTTAAGGAGAAGCAGGAGGAATACGCCCAG
AAGAACGAGAAGCGCAAAAACAAAAAGGAGGCCAAGCCTGAGCCTGCCTT
CGAGCTGCCCAAGAACGCCATTGTTGTCTTCGAGGGCGCTCCGGAGACAT
CTAGCCGCGAGGAAATTCGCGAAGCCTTCGAGAAGATCAAGGACTTCGAG
GTGGCCTACATTGAGTTCGCCAAGGGCGAAACCAAGGGCTCTGTGCGGCT
GACGGAGGCCGATGCGGCCGAAAAGTACATTGCCAAGGTGGAGGAAGGCA
AGCTCAAGTTCAAAGATGAGGTCTCTCTGTCGCTGCGAAAGGCCACCGAG
GAGGAGGAGAAGGAGTTCATCGACAAGGCCATAGAATTCATGAAGAAGCG
ACGCGATTTCACCAGGAACAAGGGCAAGCGCTTCAATCGCAAGCGCCACG
GCGGAAACGACCACAAACATGGCGGTGGTAAGAAGGCGCGTGGGGATTAA
CTCATCCACCTATATTCCGCCACCCGAGTCTTTTGATCGCAGTAGACCAA
GCTTAATTGTTACTCGTTTTCAAAATAATCGTTGCAGGTACAGAATATTC
TTCAAATATGCATGTATAGTCTGTTACCTAAATAACGAGGTGGGCTCTAA
TTTATTTTACATAGAAGACTATGAATCCAATTGTTTCCCTCAGCAGAAAG
CTACAAATAAAGACCAGTGTGTAAAACCTGAAAAAAAAAAAAAAAAAA

FI21003.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20347309..20348289 1052..72 4875 99.8 Minus
chr2L 23010047 chr2L 20346974..20347239 1316..1051 1315 99.6 Minus
chr2L 23010047 chr2L 20346752..20346916 1480..1316 825 100 Minus
chr2L 23010047 chr2L 20348612..20348687 76..1 365 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20348950..20349930 1052..72 4875 99.8 Minus
2L 23513712 2L 20348615..20348880 1316..1051 1330 100 Minus
2L 23513712 2L 20348391..20348557 1482..1316 835 100 Minus
2L 23513712 2L 20350259..20350328 70..1 335 98.6 Minus
Blast to na_te.dros performed 2019-03-15 14:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\ISBu3 993 Dbuz\ISBu3 ISBU3 993bp 408..458 65..17 123 78.8 Minus
gypsy3 6973 gypsy3 GYPSY3 6973bp 3084..3113 285..314 114 86.7 Plus

FI21003.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:09:03 Download gff for FI21003.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20346752..20346915 1317..1480 100 <- Minus
chr2L 20346974..20347237 1053..1316 99 <- Minus
chr2L 20347309..20348288 73..1052 99 <- Minus
chr2L 20348616..20348687 1..72 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2013-03-19 12:28:54 Download gff for FI21003.complete
Subject Subject Range Query Range Percent Splice Strand
La-RB 1..1173 78..1250 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:20:30 Download gff for FI21003.complete
Subject Subject Range Query Range Percent Splice Strand
La-RA 1..1173 78..1250 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:51:53 Download gff for FI21003.complete
Subject Subject Range Query Range Percent Splice Strand
La-RA 1..1173 78..1250 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-03-19 12:28:53 Download gff for FI21003.complete
Subject Subject Range Query Range Percent Splice Strand
La-RB 1..1480 1..1480 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:20:30 Download gff for FI21003.complete
Subject Subject Range Query Range Percent Splice Strand
La-RA 83..1327 72..1316 99 -> Plus
La-RA 1386..1549 1317..1480 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:51:53 Download gff for FI21003.complete
Subject Subject Range Query Range Percent Splice Strand
La-RA 83..1327 72..1316 99 -> Plus
La-RA 1386..1549 1317..1480 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:09:03 Download gff for FI21003.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20348393..20348556 1317..1480 100 <- Minus
2L 20348615..20348878 1053..1316 100 <- Minus
2L 20348950..20349929 73..1052 99 <- Minus
2L 20350257..20350328 1..72 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:09:03 Download gff for FI21003.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20348393..20348556 1317..1480 100 <- Minus
2L 20348615..20348878 1053..1316 100 <- Minus
2L 20348950..20349929 73..1052 99 <- Minus
2L 20350257..20350328 1..72 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:09:03 Download gff for FI21003.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20348393..20348556 1317..1480 100 <- Minus
2L 20348615..20348878 1053..1316 100 <- Minus
2L 20348950..20349929 73..1052 99 <- Minus
2L 20350257..20350328 1..72 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:20:30 Download gff for FI21003.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20348393..20348556 1317..1480 100 <- Minus
arm_2L 20348615..20348878 1053..1316 100 <- Minus
arm_2L 20348950..20349929 73..1052 99 <- Minus
arm_2L 20350257..20350328 1..72 97   Minus

FI21003.hyp Sequence

Translation from 77 to 1249

> FI21003.hyp
MAEVAETPSVEAQEEVAQPAEAQVLEAKNGDAKKDPAPAAEEAAGGFTKQ
ERAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLS
TDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERT
AYAKGFPLDSQISELLDFAANYDKVVNLTMRKHYDKPTKSYKFKGSIFLT
FETKDQAKAFLEQEKIVYKERELLRKWQVDYLKEKQEEYAQKNEKRKNKK
EAKPEPAFELPKNAIVVFEGAPETSSREEIREAFEKIKDFEVAYIEFAKG
ETKGSVRLTEADAAEKYIAKVEEGKLKFKDEVSLSLRKATEEEEKEFIDK
AIEFMKKRRDFTRNKGKRFNRKRHGGNDHKHGGGKKARGD*

FI21003.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
La-PA 390 CG10922-PA 1..390 1..390 1985 100 Plus
Larp7-PA 595 CG42569-PA 17..334 2..350 240 25.1 Plus

FI21003.pep Sequence

Translation from 77 to 1249

> FI21003.pep
MAEVAETPSVEAQEEVAQPAEAQVLEAKNGDAKKDPAPAAEEAAGGFTKQ
ERAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLS
TDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERT
AYAKGFPLDSQISELLDFAANYDKVVNLTMRKHYDKPTKSYKFKGSIFLT
FETKDQAKAFLEQEKIVYKERELLRKWQVDYLKEKQEEYAQKNEKRKNKK
EAKPEPAFELPKNAIVVFEGAPETSSREEIREAFEKIKDFEVAYIEFAKG
ETKGSVRLTEADAAEKYIAKVEEGKLKFKDEVSLSLRKATEEEEKEFIDK
AIEFMKKRRDFTRNKGKRFNRKRHGGNDHKHGGGKKARGD*

FI21003.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15376-PA 391 GF15376-PA 1..390 1..388 1586 81.9 Plus
Dana\GF19208-PA 607 GF19208-PA 69..203 53..202 196 30 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21576-PA 390 GG21576-PA 1..390 1..390 1966 96.9 Plus
Dere\GG18304-PA 595 GG18304-PA 17..196 2..202 182 28.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13748-PA 392 GH13748-PA 1..389 1..386 1447 75.6 Plus
Dgri\GH12028-PA 620 GH12028-PA 39..190 38..202 195 30.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
La-PA 390 CG10922-PA 1..390 1..390 1985 100 Plus
Larp7-PA 595 CG42569-PA 17..334 2..350 240 25.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17890-PA 390 GI17890-PA 30..387 27..386 1446 80.1 Plus
Dmoj\GI14301-PA 613 GI14301-PA 37..191 37..202 208 33.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26419-PA 391 GL26419-PA 1..391 1..390 1526 78 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10645-PA 392 GA10645-PA 1..392 1..390 1520 78.3 Plus
Dpse\GA11366-PA 626 GA11366-PA 3..196 2..202 214 31 Plus
Dpse\GA23201-PA 167 GA23201-PA 3..159 2..161 203 33.1 Plus
Dpse\GA27846-PA 211 GA27846-PA 63..208 9..157 199 31.2 Plus
Dpse\GA27855-PA 92 GA27855-PA 1..89 58..157 176 35 Plus
Dpse\GA27846-PA 211 GA27846-PA 1..84 58..152 163 34.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23332-PA 390 GM23332-PA 1..390 1..390 1980 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21707-PA 390 GD21707-PA 1..390 1..390 1981 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17394-PA 392 GJ17394-PA 1..389 1..386 1471 77 Plus
Dvir\GJ19358-PA 620 GJ19358-PA 42..196 36..202 207 30.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18125-PA 404 GK18125-PA 30..404 27..390 1476 76.6 Plus
Dwil\GK25140-PA 633 GK25140-PA 72..206 53..202 192 30.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12598-PA 390 GE12598-PA 1..390 1..390 1887 95.9 Plus
Dyak\GE17783-PA 595 GE17783-PA 62..196 53..202 195 30.7 Plus