Clone FI21237 Report

Search the DGRC for FI21237

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:212
Well:37
Vector:pOT2|pOTB7_DraIII
Associated Gene/Transcriptaft-RA
Protein status:FI21237.pep: gold
Sequenced Size:2318

Clone Sequence Records

FI21237.complete Sequence

2318 bp assembled on 2013-07-15

GenBank Submission: BT150145.1

> FI21237.complete
TCGCAGGTCGCTTTGTTTTTGACGCCTCGCATTTAAATTTAGCCGGAATG
AGCTTTCGTTCGTCTCCGCAGGGAAAGCCACACCCAATGACGGACTATCA
GTCCATCCGGCCTTCCGAAGTGGAGCAGCTCTTCGAGAAGAAGTTCCACT
ATCAGAAGCCGAAAGGAAACAAATCCTGGCAGTTGCCGCCACCGGATCAG
GCTCTCTTCAGTGAGTTCTACCAGTTCGAGGCGCTGCAGGGACTGCGCGA
GCAGCTGAATGCGGTTAAAAGCAAACTCAATGACTATGGCGTGCAGGAAT
GGAGTGCTCACACCAACAGGCGTGACCCTTCTGGCGAGGTGTCCTGGCGC
CTGAAAAACGACACGAAGGCCGAATTTGTAACTGTGGCATGGTGCAAGTT
GTTCGAGTGCCTGCATCGTTATCCATTGGTCACGAAGCCGGCGGTCAACA
GTATGCATCTCTGCGAGGCACCCGGTGCCTTCATAGCATCTCTGAATCAT
TACCTTCATAGCAAATATGAAAAGGATGAGATTAAATGGCGCTGGCGCTC
AACTACTTTGAATCCGTACTATGAAGGCAATGCTATAAACCAGATGATCA
GCGATGACAGGTTCATCGTCCACACGCTGGACAACTGGTTCTTTCACAAA
GATCTAACTGGAAATCTACTAGATGTGGCCAACATTGACCACCTGGTGGA
ACGTTGTGAGGTGGAGTTCCAGGGACAGGTGGATCTTGTCACTGCCGATG
GTTCCATCGATTGTGCCGCACAGCCTGATTGCCAGGAAGAGATAGTGGTT
CGCCTTTTCTTTGCTGAAGTACTCAGTGCCTTAAGAATTCTCTCAAGTGG
CGGTAACTTCCTAGTGAAGATGTTTACCCTCTTCGAGGCTTGCAGTGTAT
CTCTACTTTATACACTCAATTGCATCTTTGAGGAGGTACACATCTTTAAG
CCGGCTACTTCCAAGCGGGGAAATTCGGAAGTGTATGTTATCTGCCTGAA
CTACAACAAGGACCATCCCGACTTGCCTCGTTTGCTAGAGGAGATAAAGA
GCAAGCTTGCTCAGCCGAATGACACATTGGTAATGCCACTGTTTGCCAAG
TTCCAGATTCCCCACGACTTTCTCATGCAGCACGAGATCGCCTGCCGTAT
GTACATGAAGCTTCAAACGGATGCCATCGAGGGCAGTATCTATGCCTACG
AGTCCAATGATCGTCATTATCTGAGACATCTTCATCACCTGCGCAGTCTT
GTCGCGAACACCTACTACAGTCTATACAAAGTGAAGCCATTAGAAGATAG
CCTGTGCATCGTGGACAAGGAGGCCACCAGTAAGGCTCTGGGATTCCAAG
TGCCTGTCTATGGCGGTTCCTACACAGAAAGGGAGTCCTTGAAACACGGT
GACCTTCTCAAGCAGATTTACTGCTTGCGTCGGGAATTTAATCAACTGGA
GAAGTGTCTTAACAATAGAACACCGTATTCATACGTTAAGAACAGAACGG
CACCCTTGAATCTTCACATTTCACGAGGAGCACCTGTTCAGAGCCTGCAA
AGCAGCATGTTTGCCTCGGAACCAATACTCATTCTGCGCCTTCGCATCCT
GGACACATTTGAACTCGACCCTGTCTGGCAGTCTGCGCCAAAGTGCCAGT
TGGAAAGCAAGACACTATGCTACCTGCCACCAACAGAAGACGAGGCATTC
CACACCGCCCAGCAGCGCTTTTTCATTGATCTCCTGGAAGAAGTAAAGAA
ATTGAAGCCCGACAGCATTGTCTTCCACAAGTTCCTGTTTCTCACCCATT
ACGCGGCGTCGCTGCTCTTATTTCTCATAGAGAGCGTTTATCAGGATTGT
TGTTTTAATAGCAATCAAGCGCAAACTCTCACGTTGAGTAAGCTAAAAGA
TACGGCTAACAGTGCCTTGGAACAGGTGCTGGAACTTCTTAAGGACGAGC
AGGCGGGGGCCATTCACAGCCTGCTGGACATTAAGGAGCTGCAGAAGAAC
CAGTTCAGCAAGGCGCTTATTCAGCACAACAACAGCATTGTAATGACCTG
CTTCCGTAGCATGTTGGGCGAGGAATCATTTCCCATGCCCGTAGCTCCGA
CATCCAACTCAGATGTCGGTTCCATCCAAGAGTCGGCAGCTGTATTTTAA
CATAACGAACATGTATTTCTCACTTGCATCAAATTACAGTGCTACTTTTA
CAAAACTAGGTACTCTGCCGGGGAAATATCTGCTTAAATGTTTTCTGAGG
ATAGTTTTTCATGGATCAAGAATGAAAATTAAATAACTAACAAAAAAAAA
AAAAAAAAAAAAAAAAAA

FI21237.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13673945..13675707 529..2291 8740 99.7 Plus
chr2R 21145070 chr2R 13673452..13673893 89..530 2180 99.5 Plus
chr2R 21145070 chr2R 13673309..13673397 1..89 430 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17786792..17788561 529..2298 8805 99.8 Plus
2R 25286936 2R 17786299..17786740 89..530 2195 99.8 Plus
2R 25286936 2R 17786156..17786244 1..89 430 98.9 Plus
3L 28110227 3L 18711484..18711526 2318..2276 185 95.3 Minus
Blast to na_te.dros performed on 2019-03-15 14:33:15 has no hits.

FI21237.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:34:21 Download gff for FI21237.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13673309..13673397 1..89 98 -> Plus
chr2R 13673453..13673893 90..530 99 -> Plus
chr2R 13673947..13675707 531..2291 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2013-07-15 09:46:39 Download gff for FI21237.complete
Subject Subject Range Query Range Percent Splice Strand
aft-RA 1..2103 48..2150 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:34:11 Download gff for FI21237.complete
Subject Subject Range Query Range Percent Splice Strand
aft-RA 1..2103 48..2150 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:02:21 Download gff for FI21237.complete
Subject Subject Range Query Range Percent Splice Strand
aft-RA 1..2103 48..2150 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-07-15 09:46:39 Download gff for FI21237.complete
Subject Subject Range Query Range Percent Splice Strand
aft-RA 20..2310 1..2291 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:34:11 Download gff for FI21237.complete
Subject Subject Range Query Range Percent Splice Strand
aft-RA 22..2312 1..2291 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:02:21 Download gff for FI21237.complete
Subject Subject Range Query Range Percent Splice Strand
aft-RA 22..2312 1..2291 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:34:21 Download gff for FI21237.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17786156..17786244 1..89 98 -> Plus
2R 17786300..17786740 90..530 99 -> Plus
2R 17786794..17788554 531..2291 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:34:21 Download gff for FI21237.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17786156..17786244 1..89 98 -> Plus
2R 17786300..17786740 90..530 99 -> Plus
2R 17786794..17788554 531..2291 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:34:21 Download gff for FI21237.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17786156..17786244 1..89 98 -> Plus
2R 17786300..17786740 90..530 99 -> Plus
2R 17786794..17788554 531..2291 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:34:11 Download gff for FI21237.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13673661..13673749 1..89 98 -> Plus
arm_2R 13673805..13674245 90..530 99 -> Plus
arm_2R 13674299..13676059 531..2291 99   Plus

FI21237.pep Sequence

Translation from 2 to 2149

> FI21237.pep
AGRFVFDASHLNLAGMSFRSSPQGKPHPMTDYQSIRPSEVEQLFEKKFHY
QKPKGNKSWQLPPPDQALFSEFYQFEALQGLREQLNAVKSKLNDYGVQEW
SAHTNRRDPSGEVSWRLKNDTKAEFVTVAWCKLFECLHRYPLVTKPAVNS
MHLCEAPGAFIASLNHYLHSKYEKDEIKWRWRSTTLNPYYEGNAINQMIS
DDRFIVHTLDNWFFHKDLTGNLLDVANIDHLVERCEVEFQGQVDLVTADG
SIDCAAQPDCQEEIVVRLFFAEVLSALRILSSGGNFLVKMFTLFEACSVS
LLYTLNCIFEEVHIFKPATSKRGNSEVYVICLNYNKDHPDLPRLLEEIKS
KLAQPNDTLVMPLFAKFQIPHDFLMQHEIACRMYMKLQTDAIEGSIYAYE
SNDRHYLRHLHHLRSLVANTYYSLYKVKPLEDSLCIVDKEATSKALGFQV
PVYGGSYTERESLKHGDLLKQIYCLRREFNQLEKCLNNRTPYSYVKNRTA
PLNLHISRGAPVQSLQSSMFASEPILILRLRILDTFELDPVWQSAPKCQL
ESKTLCYLPPTEDEAFHTAQQRFFIDLLEEVKKLKPDSIVFHKFLFLTHY
AASLLLFLIESVYQDCCFNSNQAQTLTLSKLKDTANSALEQVLELLKDEQ
AGAIHSLLDIKELQKNQFSKALIQHNNSIVMTCFRSMLGEESFPMPVAPT
SNSDVGSIQESAAVF*

FI21237.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11674-PA 702 GF11674-PA 11..702 23..715 2752 72 Plus
Dana\GF21495-PA 789 GF21495-PA 214..393 153..345 192 28.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21823-PA 700 GG21823-PA 1..700 16..715 3418 90.6 Plus
Dere\GG18562-PA 788 GG18562-PA 262..380 213..331 193 34.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22026-PA 693 GH22026-PA 6..691 34..714 2377 64.5 Plus
Dgri\GH24820-PA 793 GH24820-PA 260..384 208..333 189 33.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
aft-PA 700 CG5032-PA 1..700 16..715 3690 100 Plus
CG6379-PB 788 CG6379-PB 269..380 220..331 186 35.7 Plus
CG6379-PA 788 CG6379-PA 269..380 220..331 186 35.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19115-PA 697 GI19115-PA 10..695 39..714 2288 61.6 Plus
Dmoj\GI16152-PA 1022 GI16152-PA 463..585 208..331 187 33.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17223-PA 704 GL17223-PA 9..690 38..714 2760 73.1 Plus
Dper\GL14540-PA 589 GL14540-PA 257..430 207..379 202 29.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18609-PA 704 GA18609-PA 9..699 38..714 2748 72.9 Plus
Dpse\GA19551-PA 785 GA19551-PA 257..430 207..379 204 29.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21824-PA 701 GM21824-PA 1..701 16..715 3568 93.9 Plus
Dsec\GM12706-PA 788 GM12706-PA 257..426 207..372 198 29.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11317-PA 701 GD11317-PA 1..701 16..715 3594 94.4 Plus
Dsim\GD16313-PA 503 GD16313-PA 5..141 240..372 171 30.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22245-PA 702 GJ22245-PA 6..700 34..714 2393 65.5 Plus
Dvir\GJ16429-PA 794 GJ16429-PA 271..382 220..331 189 34.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22226-PA 694 GK22226-PA 11..678 39..702 2267 64.2 Plus
Dwil\GK10359-PA 789 GK10359-PA 269..407 220..358 193 33.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11900-PA 700 GE11900-PA 1..700 16..715 3367 90 Plus
Dyak\GE16874-PA 788 GE16874-PA 262..380 213..331 191 34.5 Plus

FI21237.hyp Sequence

Translation from 2 to 2149

> FI21237.hyp
ADRFVFDASHLNLAGMSFRSSPQGKPHPMTDYQSIRPSEVEQLFEKKFHY
QKPKGNKSWQLPPPDQALFSEFYQFEALQGLREQLNAVKSKLNDYGVQEW
SAHTNRRDPSGEVSWRLKNDTKAEFVTVAWCKLFECLHRYPLVTKPAVNS
MHLCEAPGAFIASLNHYLHSKYEKDEIKWRWRSTTLNPYYEGNAINQMIS
DDRFIVHTLDNWFFHKDLTGNLLDVANIDHLVERCEVEFQGQVDLVTADG
SIDCAAQPDCQEEIVVRLFFAEVLSALRILSSGGNFLVKMFTLFEACSVS
LLYTLNCIFEEVHIFKPATSKRGNSEVYVICLNYNKDHPDLPRLLEEIKS
KLAQPNDTLVMPLFAKFQIPHDFLMQHEIACRMYMKLQTDAIEGSIYAYE
SNDRHYLRHLHHLRSLVANTYYSLYKVKPLEDSLCIVDKEATSKALGFQV
PVYGGSYTERESLKHGDLLKQIYCLRREFNQLEKCLNNRTPYSYVKNRTA
PLNLHISRGAPVQSLQSSMFASEPILILRLRILDTFELDPVWQSAPKCQL
ESKTLCYLPPTEDEAFHTAQQRFFIDLLEEVKKLKPDSIVFHKFLFLTHY
AASLLLFLIESVYQDCCFNSNQAQTLTLSKLKDTANSALEQVLELLKDEQ
AGAIHSLLDIKELQKNQFSKALIQHNNSIVMTCFRSMLGEESFPMPVAPT
SNSDVGSIQESAAVF*

FI21237.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
aft-PA 700 CG5032-PA 1..700 16..715 3690 100 Plus
CG6379-PB 788 CG6379-PB 269..380 220..331 186 35.7 Plus
CG6379-PA 788 CG6379-PA 269..380 220..331 186 35.7 Plus