Clone FI21816 Report

Search the DGRC for FI21816

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:218
Well:16
Vector:pFlc-1
Associated Gene/TranscriptVdup1-RA
Protein status:FI21816.pep: gold
Sequenced Size:1473

Clone Sequence Records

FI21816.complete Sequence

1473 bp assembled on 2013-07-17

GenBank Submission: BT150163.1

> FI21816.complete
AGTTGCCAAACAAACGCTCGAGAGCGTGGACGAGATCTTGCCAAACGAAT
ATCGCTCAAAGGCAGAACGGGTTAAATCGGTTCGGTTTGGACTGGTGTTC
CGATCTGGCCAAAAAACACCTTTGTGTGTACAGGAATCATCAACATTGTC
ACCAGTGCACCAAACAGGCTTGCCGACAGTCGCAGTTGCAGCTTACGCTT
TTGGCGTACGAATGAAATCGGCAACAAAACAGAGGCACGATGCCGCGCAA
GTTGCTTAAATTCCTTATCATCTTCGACAACACTTCCCTCCTGTACTTCC
CGGGCCAGTTTCTCTCCGGACGGGTTCTAATCGAATTGCAGGATGAGACG
CCTGCTTTGGGACTTCATTTCCATGTGGTAGGCGAAGGGGTCGTGCGCAA
CGGGCGGCGACAGGAGCGGACATACGATAAGGAGAACTATATCGACTTTC
GGATGCGACTTCTGGGGGACGTAGACCAAGGAGGTCCAGCTATACTCTCG
CCAGGAATTCACAGCTTCCCCTTCAAACTCGGCTTGCCACTGGGTCTTCC
ATCTACATTTCTCGGTCGGTACGGCTGGATTCAGTTCTACTGCAAGGCGG
CGCTCCGCGAGAACAATGGCATTATCCATAAGAACCACCAGGTCTTCATT
GTGATGAATCCCATCGACCTAAACCTTGAAAAGCCCATCTTAGCACAACC
GTTCACCTGCGAAGTTGAGCACAAGCTAGGCGTCGTCTGTGTTGGTGGAG
GTCAGATAAAGTGCAGAGTGTCCCTTGATCGCGGTGGGTATGTGCCCGGC
GAGAATATTCTGGTCACCGCATTTATATCCAACTACAGTAATGTGTCCAT
TAAACGGACTAAGGCATCCCTCACTGAGACCATCGAGTATTTGGCGCGGG
GGAAGGTGGTGCAAACGGAAAAACGGGAGCTGGCTGTTTTAGTTCGTGGC
AAGATCCGTCCGGGGGCCAAAGACGAGTGGCACAACGAGCTTTACGTTCC
ACCCCTGCCGCCGACCAATCTTCATGGCTGCCACCTGATCAAAATATCCT
ACGACGTCTTCTTCGTGATCGAACCCAAGTCCATGGAGAAGGAGATTAAG
CTACAGCTTCCTATCGTGCTTGCGACGTACCCCTTTCGACACTCCGGTGA
TGCGGTCAATGCCAACACCTGGCCGGAATCGGTGCTTAAGCCGGACACGC
ACACCCACTATCCGTCCACACTACCCATATTCCGGCCCTGGCTGCACGAG
AAGCCTATCGAGGCATAGCCCGCAGCTTTTAGGATTGCTGTGTATCACAA
CTTGTTAAGACCGATTTGCGCCATACAACAATTTAAACTTATTTAACTTA
TACTTAACGTTTTTTAATGTTTCTGGTCTTTGCATTTGTAGGTCTTCCGT
TCCCAAAAATTTGTTCATGATTGAAGAATTTATAACAAATACAAACGAAA
GTTAACACAAAAAAAAAAAAAAA

FI21816.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 176463..177043 1457..877 2905 100 Minus
chr3L 24539361 chr3L 177344..177836 695..203 2465 100 Minus
chr3L 24539361 chr3L 177108..177290 878..696 915 100 Minus
chr3L 24539361 chr3L 178458..178591 134..1 670 100 Minus
chr3L 24539361 chr3L 178197..178270 204..131 370 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 176497..177081 1461..877 2910 99.8 Minus
3L 28110227 3L 177382..177874 695..203 2465 100 Minus
3L 28110227 3L 177146..177328 878..696 915 100 Minus
3L 28110227 3L 178496..178629 134..1 670 100 Minus
3L 28110227 3L 178235..178308 204..131 370 100 Minus
Blast to na_te.dros performed on 2019-03-15 11:17:27 has no hits.

FI21816.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:18:41 Download gff for FI21816.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 176462..177041 879..1458 99 <- Minus
chr3L 177108..177290 696..878 100 <- Minus
chr3L 177344..177835 204..695 100 <- Minus
chr3L 178198..178267 134..203 100 <- Minus
chr3L 178459..178591 1..133 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2013-07-17 09:23:23 Download gff for FI21816.complete
Subject Subject Range Query Range Percent Splice Strand
Vdup1-RC 1..1029 240..1268 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:26:16 Download gff for FI21816.complete
Subject Subject Range Query Range Percent Splice Strand
Vdup1-RA 1..1029 240..1268 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:28:45 Download gff for FI21816.complete
Subject Subject Range Query Range Percent Splice Strand
Vdup1-RA 1..1029 240..1268 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-07-17 09:23:23 Download gff for FI21816.complete
Subject Subject Range Query Range Percent Splice Strand
Vdup1-RC 1..1457 1..1458 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:26:16 Download gff for FI21816.complete
Subject Subject Range Query Range Percent Splice Strand
Vdup1-RC 7..1462 1..1456 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:45 Download gff for FI21816.complete
Subject Subject Range Query Range Percent Splice Strand
Vdup1-RC 7..1462 1..1456 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:18:41 Download gff for FI21816.complete
Subject Subject Range Query Range Percent Splice Strand
3L 176500..177079 879..1458 99 <- Minus
3L 177146..177328 696..878 100 <- Minus
3L 177382..177873 204..695 100 <- Minus
3L 178236..178305 134..203 100 <- Minus
3L 178497..178629 1..133 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:18:41 Download gff for FI21816.complete
Subject Subject Range Query Range Percent Splice Strand
3L 176500..177079 879..1458 99 <- Minus
3L 177146..177328 696..878 100 <- Minus
3L 177382..177873 204..695 100 <- Minus
3L 178236..178305 134..203 100 <- Minus
3L 178497..178629 1..133 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:18:41 Download gff for FI21816.complete
Subject Subject Range Query Range Percent Splice Strand
3L 176500..177079 879..1458 99 <- Minus
3L 177146..177328 696..878 100 <- Minus
3L 177382..177873 204..695 100 <- Minus
3L 178236..178305 134..203 100 <- Minus
3L 178497..178629 1..133 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:26:16 Download gff for FI21816.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 176500..177079 879..1458 99 <- Minus
arm_3L 177146..177328 696..878 100 <- Minus
arm_3L 177382..177873 204..695 100 <- Minus
arm_3L 178236..178305 134..203 100 <- Minus
arm_3L 178497..178629 1..133 100   Minus

FI21816.hyp Sequence

Translation from 239 to 1267

> FI21816.hyp
MPRKLLKFLIIFDNTSLLYFPGQFLSGRVLIELQDETPALGLHFHVVGEG
VVRNGRRQERTYDKENYIDFRMRLLGDVDQGGPAILSPGIHSFPFKLGLP
LGLPSTFLGRYGWIQFYCKAALRENNGIIHKNHQVFIVMNPIDLNLEKPI
LAQPFTCEVEHKLGVVCVGGGQIKCRVSLDRGGYVPGENILVTAFISNYS
NVSIKRTKASLTETIEYLARGKVVQTEKRELAVLVRGKIRPGAKDEWHNE
LYVPPLPPTNLHGCHLIKISYDVFFVIEPKSMEKEIKLQLPIVLATYPFR
HSGDAVNANTWPESVLKPDTHTHYPSTLPIFRPWLHEKPIEA*

FI21816.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
Vdup1-PE 342 CG7047-PE 1..342 1..342 1821 100 Plus
Vdup1-PD 342 CG7047-PD 1..342 1..342 1821 100 Plus
Vdup1-PA 342 CG7047-PA 1..342 1..342 1821 100 Plus
Vdup1-PC 342 CG7047-PC 1..342 1..342 1821 100 Plus
Vdup1-PB 342 CG7047-PB 1..342 1..342 1821 100 Plus

FI21816.pep Sequence

Translation from 239 to 1267

> FI21816.pep
MPRKLLKFLIIFDNTSLLYFPGQFLSGRVLIELQDETPALGLHFHVVGEG
VVRNGRRQERTYDKENYIDFRMRLLGDVDQGGPAILSPGIHSFPFKLGLP
LGLPSTFLGRYGWIQFYCKAALRENNGIIHKNHQVFIVMNPIDLNLEKPI
LAQPFTCEVEHKLGVVCVGGGQIKCRVSLDRGGYVPGENILVTAFISNYS
NVSIKRTKASLTETIEYLARGKVVQTEKRELAVLVRGKIRPGAKDEWHNE
LYVPPLPPTNLHGCHLIKISYDVFFVIEPKSMEKEIKLQLPIVLATYPFR
HSGDAVNANTWPESVLKPDTHTHYPSTLPIFRPWLHEKPIEA*

FI21816.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24927-PA 342 GF24927-PA 1..342 1..342 1758 96.2 Plus
Dana\GF17328-PA 418 GF17328-PA 8..310 10..299 302 27 Plus
Dana\GF17285-PA 436 GF17285-PA 7..309 10..301 248 24 Plus
Dana\GF23083-PA 507 GF23083-PA 3..312 6..306 248 24.1 Plus
Dana\GF17683-PA 477 GF17683-PA 6..331 9..314 236 25.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14685-PA 342 GG14685-PA 1..342 1..342 1809 99.7 Plus
Dere\GG10147-PA 422 GG10147-PA 8..330 10..319 302 25.7 Plus
Dere\GG24962-PA 438 GG24962-PA 10..306 13..299 260 24.2 Plus
Dere\GG24918-PA 513 GG24918-PA 3..312 6..306 238 23.8 Plus
Dere\GG24984-PA 435 GG24984-PA 7..343 10..325 236 22.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15733-PA 339 GH15733-PA 1..337 1..339 1574 89.4 Plus
Dgri\GH17389-PA 407 GH17389-PA 8..333 10..318 304 26.9 Plus
Dgri\GH19258-PA 404 GH19258-PA 7..308 10..305 265 27.1 Plus
Dgri\GH18616-PA 479 GH18616-PA 3..312 6..306 251 25.3 Plus
Dgri\GH19257-PA 430 GH19257-PA 6..307 9..299 245 24.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
Vdup1-PE 342 CG7047-PE 1..342 1..342 1821 100 Plus
Vdup1-PD 342 CG7047-PD 1..342 1..342 1821 100 Plus
Vdup1-PA 342 CG7047-PA 1..342 1..342 1821 100 Plus
Vdup1-PC 342 CG7047-PC 1..342 1..342 1821 100 Plus
Vdup1-PB 342 CG7047-PB 1..342 1..342 1821 100 Plus
CG1105-PA 422 CG1105-PA 11..309 13..298 296 26.4 Plus
CG18745-PA 433 CG18745-PA 7..306 10..298 240 23.9 Plus
CG10086-PA 469 CG10086-PA 6..310 9..298 240 25.8 Plus
CG18746-PA 438 CG18746-PA 10..323 13..318 238 24.3 Plus
CG18748-PC 409 CG18748-PC 7..309 9..302 233 22.2 Plus
CG2993-PA 511 CG2993-PA 3..312 6..306 229 23.6 Plus
CG2993-PB 524 CG2993-PB 3..312 6..306 229 23.6 Plus
CG2993-PC 545 CG2993-PC 3..312 6..306 229 23.6 Plus
CG18747-PB 418 CG18747-PB 7..339 10..330 210 23.6 Plus
CG18748-PB 359 CG18748-PB 42..259 86..302 206 24.5 Plus
CG2641-PA 429 CG2641-PA 10..333 13..329 203 23.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12789-PA 340 GI12789-PA 1..337 1..339 1588 90 Plus
Dmoj\GI23546-PA 409 GI23546-PA 8..310 10..299 311 27.4 Plus
Dmoj\GI23466-PA 427 GI23466-PA 11..305 13..299 254 25.9 Plus
Dmoj\GI23468-PA 405 GI23468-PA 7..302 10..299 252 26 Plus
Dmoj\GI23467-PA 430 GI23467-PA 3..307 6..299 249 24.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16087-PA 344 GL16087-PA 1..344 1..342 1768 97.7 Plus
Dper\GL22035-PA 420 GL22035-PA 8..310 10..299 312 27.4 Plus
Dper\GL12155-PA 435 GL12155-PA 7..311 10..301 253 23.5 Plus
Dper\GL12147-PA 512 GL12147-PA 3..312 6..306 240 24.7 Plus
Dper\GL12153-PA 403 GL12153-PA 10..325 13..319 235 22.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20057-PA 344 GA20057-PA 1..344 1..342 1768 97.7 Plus
Dpse\GA10727-PA 420 GA10727-PA 8..310 10..299 312 27.4 Plus
Dpse\GA15063-PA 435 GA15063-PA 7..311 10..301 255 24.5 Plus
Dpse\GA15064-PA 431 GA15064-PA 10..325 13..319 241 22.5 Plus
Dpse\GA10062-PA 466 GA10062-PA 6..326 9..319 239 25.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14300-PA 342 GM14300-PA 1..342 1..342 1806 99.4 Plus
Dsec\GM10515-PA 422 GM10515-PA 8..310 10..299 300 26.1 Plus
Dsec\GM10457-PA 438 GM10457-PA 9..306 12..299 261 24.1 Plus
Dsec\GM10973-PA 469 GM10973-PA 6..311 9..299 252 26.3 Plus
Dsec\GM10458-PA 406 GM10458-PA 7..306 9..299 244 23 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13537-PA 342 GD13537-PA 1..342 1..342 1809 99.7 Plus
Dsim\GD19461-PA 438 GD19461-PA 9..306 12..299 262 24.1 Plus
Dsim\GD19947-PA 469 GD19947-PA 6..311 9..299 252 26.3 Plus
Dsim\GD19457-PA 511 GD19457-PA 3..312 6..306 238 23.8 Plus
Dsim\GD19463-PA 435 GD19463-PA 7..309 10..301 225 22.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16089-PA 339 GJ16089-PA 1..337 1..339 1572 89.1 Plus
Dvir\GJ24027-PA 410 GJ24027-PA 8..333 10..318 309 26.7 Plus
Dvir\GJ10223-PA 406 GJ10223-PA 9..310 12..307 271 26.5 Plus
Dvir\GJ10221-PA 431 GJ10221-PA 11..305 13..299 250 24.6 Plus
Dvir\GJ10216-PA 491 GJ10216-PA 3..312 6..306 247 25 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12676-PA 344 GK12676-PA 4..344 3..342 1621 93.3 Plus
Dwil\GK10823-PA 425 GK10823-PA 8..332 10..329 322 27.6 Plus
Dwil\GK11059-PA 430 GK11059-PA 17..305 19..301 269 26.3 Plus
Dwil\GK11060-PA 431 GK11060-PA 7..310 10..302 266 23.9 Plus
Dwil\GK12019-PA 469 GK12019-PA 6..311 9..299 247 24.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21046-PA 342 GE21046-PA 1..342 1..342 1809 99.7 Plus
Dyak\GE25824-PA 422 GE25824-PA 8..310 10..299 297 26.4 Plus
Dyak\GE25771-PA 438 GE25771-PA 10..323 13..318 249 24 Plus
Dyak\GE24941-PA 469 GE24941-PA 6..311 9..299 242 25.4 Plus
Dyak\GE11110-PA 518 GE11110-PA 3..312 6..306 238 23.8 Plus