Clone FI21822 Report

Search the DGRC for FI21822

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:218
Well:22
Vector:pFlc-1
Associated Gene/TranscriptRh2-RA
Protein status:FI21822.pep: gold
Sequenced Size:1382

Clone Sequence Records

FI21822.complete Sequence

1382 bp assembled on 2013-07-17

GenBank Submission: BT150161.1

> FI21822.complete
GACAGATCCACTTCGATGAGCCATCGTCTAGTCAAAGGGGTTGCGGGTAG
CTGAGCATGGAGCGCAGTCATTTGCCGGAGACGCCATTCGACCTGGCCCA
TTCTGGGCCCAGGTTTCAGGCCCAGTCGAGTGGCAATGGTTCCGTGCTGG
ACAATGTGCTGCCCGACATGGCGCACCTGGTGAACCCCTACTGGAGCCGC
TTTGCGCCCATGGATCCCATGATGAGCAAAATTCTGGGATTGTTCACCCT
GGCCATTATGATCATCTCGTGCTGCGGCAACGGAGTGGTGGTCTACATTT
TCGGTGGAACAAAGTCGCTGCGCACGCCGGCAAATTTGCTCGTTCTCAAC
CTGGCCTTCTCCGACTTCTGTATGATGGCCTCCCAGTCGCCGGTGATGAT
TATTAACTTCTACTACGAGACTTGGGTGCTGGGTCCGCTGTGGTGCGACA
TCTACGCGGGATGTGGCTCGCTCTTTGGCTGTGTGTCCATCTGGTCCATG
TGCATGATTGCCTTCGATCGGTACAATGTGATAGTGAAGGGTATCAATGG
CACACCCATGACCATCAAGACGTCTATAATGAAGATACTTTTCATCTGGA
TGATGGCTGTCTTTTGGACTGTCATGCCATTGATTGGATGGAGCGCCTAT
GTGCCCGAGGGCAATCTGACTGCCTGCAGCATTGACTATATGACGCGTAT
GTGGAACCCGCGATCTTATTTAATCACCTACTCCCTCTTCGTTTACTACA
CTCCACTGTTTCTCATCTGCTACTCCTACTGGTTCATCATTGCCGCCGTG
GCAGCACATGAAAAAGCGATGCGGGAACAGGCCAAGAAGATGAATGTGAA
ATCCCTGCGGAGCTCTGAGGATTGCGACAAAAGTGCCGAGGGAAAACTGG
CCAAGGTGGCTCTAACTACCATCTCCCTATGGTTTATGGCATGGACACCA
TACCTTGTCATTTGCTACTTCGGACTCTTCAAAATCGACGGATTGACCCC
ACTGACGACCATTTGGGGAGCGACTTTCGCCAAAACGAGCGCAGTCTACA
ATCCGATTGTGTACGGCATTAGCCATCCCAAGTACCGCATAGTTCTCAAG
GAAAAGTGCCCTATGTGTGTGTTTGGCAATACGGATGAGCCGAAACCGGA
TGCACCCGCTTCCGATACGGAAACTACGTCTGAGGCGGATTCAAAGGCTT
AAATCGTGAAAAAAAACCAACGCAATTGCCTGCAAAGGGCACAGAAAAGT
TTAAAAAAAGTGATGCAATATCGTAAAGTGATACAAAAATGTAAAAAAAA
AATGGAATAAACCTCAGTATAACAAAAAGTAGTTTCCTAAAACTTTACAA
AATAAAGTTAGTTTGCAAAAAAAAAAAAAAAA

FI21822.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14723660..14724576 156..1072 4540 99.7 Plus
chr3R 27901430 chr3R 14724745..14725006 1105..1366 1295 99.6 Plus
chr3R 27901430 chr3R 14723410..14723566 2..158 755 98.7 Plus
chr3R 27901430 chr3R 15710672..15710922 1069..819 460 78.9 Minus
chr3R 27901430 chr3R 15711428..15711696 541..273 310 74.3 Minus
chr3R 27901430 chr3R 15711006..15711151 793..648 235 77.4 Minus
chr3R 27901430 chr3R 14724655..14724692 1069..1106 190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18899673..18900589 156..1072 4585 100 Plus
3R 32079331 3R 18900758..18901022 1105..1369 1310 99.6 Plus
3R 32079331 3R 18899423..18899579 2..158 785 100 Plus
3R 32079331 3R 19886743..19886993 1069..819 460 78.9 Minus
3R 32079331 3R 19887504..19887772 541..273 295 74 Minus
3R 32079331 3R 19887077..19887222 793..648 235 77.4 Minus
3R 32079331 3R 18900668..18900705 1069..1106 190 100 Plus
Blast to na_te.dros performed on 2019-03-15 11:21:09 has no hits.

FI21822.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:22:14 Download gff for FI21822.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14723408..14723563 1..155 98 -> Plus
chr3R 14723660..14724576 156..1072 99 -> Plus
chr3R 14724659..14724692 1073..1106 100 -> Plus
chr3R 14724747..14725006 1107..1366 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2013-07-17 17:18:48 Download gff for FI21822.complete
Subject Subject Range Query Range Percent Splice Strand
Rh2-RA 1..1146 57..1202 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:27:05 Download gff for FI21822.complete
Subject Subject Range Query Range Percent Splice Strand
Rh2-RA 1..1146 57..1202 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:30:10 Download gff for FI21822.complete
Subject Subject Range Query Range Percent Splice Strand
Rh2-RA 1..1146 57..1202 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-07-17 17:18:48 Download gff for FI21822.complete
Subject Subject Range Query Range Percent Splice Strand
Rh2-RA 1..1365 2..1366 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:27:05 Download gff for FI21822.complete
Subject Subject Range Query Range Percent Splice Strand
Rh2-RA 1..1365 2..1366 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:10 Download gff for FI21822.complete
Subject Subject Range Query Range Percent Splice Strand
Rh2-RA 1..1365 2..1366 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:22:14 Download gff for FI21822.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18899421..18899576 1..155 99 -> Plus
3R 18899673..18900589 156..1072 100 -> Plus
3R 18900672..18900705 1073..1106 100 -> Plus
3R 18900760..18901019 1107..1366 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:22:14 Download gff for FI21822.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18899421..18899576 1..155 99 -> Plus
3R 18899673..18900589 156..1072 100 -> Plus
3R 18900672..18900705 1073..1106 100 -> Plus
3R 18900760..18901019 1107..1366 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:22:14 Download gff for FI21822.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18899421..18899576 1..155 99 -> Plus
3R 18899673..18900589 156..1072 100 -> Plus
3R 18900672..18900705 1073..1106 100 -> Plus
3R 18900760..18901019 1107..1366 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:27:05 Download gff for FI21822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14725143..14725298 1..155 99 -> Plus
arm_3R 14725395..14726311 156..1072 100 -> Plus
arm_3R 14726394..14726427 1073..1106 100 -> Plus
arm_3R 14726482..14726741 1107..1366 99   Plus

FI21822.hyp Sequence

Translation from 56 to 1201

> FI21822.hyp
MERSHLPETPFDLAHSGPRFQAQSSGNGSVLDNVLPDMAHLVNPYWSRFA
PMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLA
FSDFCMMASQSPVMIINFYYETWVLGPLWCDIYAGCGSLFGCVSIWSMCM
IAFDRYNVIVKGINGTPMTIKTSIMKILFIWMMAVFWTVMPLIGWSAYVP
EGNLTACSIDYMTRMWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAA
HEKAMREQAKKMNVKSLRSSEDCDKSAEGKLAKVALTTISLWFMAWTPYL
VICYFGLFKIDGLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEK
CPMCVFGNTDEPKPDAPASDTETTSEADSKA*

FI21822.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
Rh2-PA 381 CG16740-PA 1..381 1..381 2053 100 Plus
ninaE-PA 373 CG4550-PA 9..373 14..381 1370 69.6 Plus
Rh6-PB 369 CG5192-PB 7..369 18..379 1000 52.2 Plus
Rh4-PA 378 CG9668-PA 13..371 19..376 630 39.8 Plus
Rh3-PA 383 CG10888-PA 1..376 1..376 609 38.4 Plus

FI21822.pep Sequence

Translation from 56 to 1201

> FI21822.pep
MERSHLPETPFDLAHSGPRFQAQSSGNGSVLDNVLPDMAHLVNPYWSRFA
PMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLA
FSDFCMMASQSPVMIINFYYETWVLGPLWCDIYAGCGSLFGCVSIWSMCM
IAFDRYNVIVKGINGTPMTIKTSIMKILFIWMMAVFWTVMPLIGWSAYVP
EGNLTACSIDYMTRMWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAA
HEKAMREQAKKMNVKSLRSSEDCDKSAEGKLAKVALTTISLWFMAWTPYL
VICYFGLFKIDGLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEK
CPMCVFGNTDEPKPDAPASDTETTSEADSKA*

FI21822.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23219-PA 381 GF23219-PA 1..381 1..381 1933 93.7 Plus
Dana\GF17352-PA 373 GF17352-PA 12..373 17..381 1347 69.9 Plus
Dana\GF18302-PA 369 GF18302-PA 13..369 23..379 975 52.5 Plus
Dana\GF10499-PA 380 GF10499-PA 19..351 24..352 613 41.8 Plus
Dana\GF17335-PA 385 GF17335-PA 21..371 19..368 585 39.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\Rh2-PA 381 GG23078-PA 1..381 1..381 1999 97.6 Plus
Dere\ninaE-PA 373 GG15786-PA 9..373 14..381 1350 69.6 Plus
Dere\GG16931-PA 369 GG16931-PA 7..369 18..379 978 52.2 Plus
Dere\Rh4-PA 378 GG15846-PA 13..350 19..352 611 41.2 Plus
Dere\Rh3-PA 383 GG15608-PA 1..382 1..381 608 37.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14493-PA 383 GH14493-PA 1..383 1..381 1810 87.8 Plus
Dgri\GH23312-PA 373 GH23312-PA 12..373 17..381 1352 70.1 Plus
Dgri\GH19080-PA 369 GH19080-PA 7..369 18..379 967 50.8 Plus
Dgri\GH17066-PA 383 GH17066-PA 18..355 19..352 596 40.3 Plus
Dgri\GH23919-PA 382 GH23919-PA 20..361 21..360 588 39.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rh2-PA 381 CG16740-PA 1..381 1..381 2053 100 Plus
ninaE-PA 373 CG4550-PA 9..373 14..381 1370 69.6 Plus
Rh6-PC 362 CG5192-PC 7..362 18..379 957 51.4 Plus
Rh4-PA 378 CG9668-PA 13..371 19..376 630 39.8 Plus
Rh3-PA 383 CG10888-PA 1..376 1..376 609 38.4 Plus
Rh5-PB 382 CG5279-PB 7..348 16..352 526 37.8 Plus
Rh5-PA 382 CG5279-PA 7..348 16..352 526 37.8 Plus
Rh7-PA 483 CG5638-PA 101..396 42..348 500 36.3 Plus
Octalpha2R-PC 670 CG18208-PC 78..323 20..269 240 26.6 Plus
Octalpha2R-PA 699 CG18208-PA 78..323 20..269 240 26.6 Plus
Octalpha2R-PB 740 CG18208-PB 78..323 20..269 240 26.6 Plus
AstA-R1-PD 394 CG2872-PD 35..355 22..344 224 22.1 Plus
AstA-R1-PB 394 CG2872-PB 35..355 22..344 224 22.1 Plus
Dop1R1-PC 481 CG9652-PC 106..428 46..348 201 22.1 Plus
5-HT1B-PD 562 CG15113-PD 64..301 25..276 199 26.3 Plus
5-HT1B-PA 617 CG15113-PA 64..301 25..276 199 26.3 Plus
5-HT1B-PE 629 CG15113-PE 64..301 25..276 199 26.3 Plus
Dop1R1-PB 496 CG9652-PB 122..443 51..348 197 21.5 Plus
Dop1R1-PD 511 CG9652-PD 137..458 51..348 197 21.5 Plus
Dop1R1-PF 535 CG9652-PF 122..443 51..348 197 21.5 Plus
Dop1R1-PE 560 CG9652-PE 122..443 51..348 197 21.5 Plus
TkR86C-PA 504 CG6515-PA 93..414 67..380 192 22.4 Plus
TkR86C-PB 555 CG6515-PB 93..394 67..363 190 22.6 Plus
5-HT7-PB 564 CG12073-PB 157..348 52..247 189 26.8 Plus
5-HT7-PA 564 CG12073-PA 157..348 52..247 189 26.8 Plus
TyrRII-PD 586 CG16766-PD 82..255 65..241 186 26.8 Plus
TyrRII-PC 586 CG16766-PC 82..255 65..241 186 26.8 Plus
TyrRII-PB 586 CG16766-PB 82..255 65..241 186 26.8 Plus
TyrRII-PA 586 CG16766-PA 82..255 65..241 186 26.8 Plus
Oct-TyrR-PB 601 CG7485-PB 111..318 59..271 186 26.7 Plus
Oct-TyrR-PA 601 CG7485-PA 111..318 59..271 186 26.7 Plus
Lkr-PA 542 CG10626-PA 37..336 59..354 183 21.3 Plus
TyrR-PC 631 CG7431-PC 116..311 61..257 180 25 Plus
TyrR-PB 631 CG7431-PB 116..311 61..257 180 25 Plus
TyrR-PA 631 CG7431-PA 116..311 61..257 180 25 Plus
5-HT1A-PB 834 CG16720-PB 230..449 57..286 178 25.7 Plus
TkR99D-PB 517 CG7887-PB 111..401 67..356 176 21.3 Plus
TkR99D-PA 519 CG7887-PA 111..401 67..356 176 21.3 Plus
TkR99D-PC 564 CG7887-PC 111..401 67..356 176 21.3 Plus
RYa-R-PA 464 CG5811-PA 107..391 59..344 174 23.4 Plus
RYa-R-PC 467 CG5811-PC 107..391 59..344 174 23.4 Plus
RYa-R-PB 518 CG5811-PB 107..391 59..344 174 23.4 Plus
Octbeta3R-PK 456 CG42244-PK 134..351 52..267 173 24.1 Plus
Octbeta3R-PG 1118 CG42244-PG 134..351 52..267 173 24.1 Plus
Octbeta3R-PF 1256 CG42244-PF 134..351 52..267 173 24.1 Plus
mAChR-A-PA 788 CG4356-PA 106..321 59..272 172 23.8 Plus
mAChR-A-PB 805 CG4356-PB 106..321 59..272 172 23.8 Plus
5-HT2A-PD 638 CG1056-PD 277..465 49..241 165 26.8 Plus
5-HT2A-PA 868 CG1056-PA 277..465 49..241 165 26.8 Plus
5-HT2A-PF 916 CG1056-PF 277..465 49..241 165 26.8 Plus
5-HT2A-PH 917 CG1056-PH 277..465 49..241 165 26.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22968-PA 384 GI22968-PA 1..384 1..381 1871 91.1 Plus
Dmoj\GI10328-PA 373 GI10328-PA 12..373 17..381 1357 70.4 Plus
Dmoj\GI23224-PA 369 GI23224-PA 13..369 23..379 980 51.7 Plus
Dmoj\GI11660-PA 384 GI11660-PA 19..372 19..369 608 40.1 Plus
Dmoj\GI10051-PA 380 GI10051-PA 16..351 19..352 598 41.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23439-PA 381 GL23439-PA 1..381 1..381 1879 92.1 Plus
Dper\ninaE-PA 373 GL12414-PA 12..373 17..381 1364 70.7 Plus
Dper\GL23758-PA 369 GL23758-PA 2..369 13..379 980 51.8 Plus
Dper\GL20699-PA 380 GL20699-PA 31..351 33..352 594 41.5 Plus
Dper\GL12515-PA 382 GL12515-PA 18..353 19..352 586 40.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Rh2-PA 381 GA14120-PA 1..381 1..381 1881 92.1 Plus
Dpse\ninaE-PA 373 GA18249-PA 12..373 17..381 1364 70.7 Plus
Dpse\GA26731-PA 369 GA26731-PA 2..369 13..379 979 51.8 Plus
Dpse\Rh4-PA 380 GA28288-PA 31..351 33..352 594 41.5 Plus
Dpse\Rh3-PA 398 GA10619-PA 34..369 19..352 586 40.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17893-PA 381 GM17893-PA 1..381 1..381 2033 99.5 Plus
Dsec\GM26888-PA 373 GM26888-PA 9..373 14..381 1352 69.6 Plus
Dsec\GM24238-PA 369 GM24238-PA 7..369 18..379 978 52.2 Plus
Dsec\GM24240-PA 369 GM24240-PA 7..369 18..379 978 52.2 Plus
Dsec\GM19275-PA 236 GM19275-PA 3..218 112..326 666 58.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19254-PA 381 GD19254-PA 1..381 1..381 2011 98.7 Plus
Dsim\GD20095-PA 373 GD20095-PA 9..373 14..381 1350 69.6 Plus
Dsim\GD19028-PA 369 GD19028-PA 7..369 18..379 978 52.2 Plus
Dsim\GD12438-PA 378 GD12438-PA 13..350 19..352 614 41.5 Plus
Dsim\GD23807-PA 382 GD23807-PA 7..348 16..352 516 38.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Rh2-PA 379 GJ14545-PA 15..379 17..381 1837 91.8 Plus
Dvir\ninaE-PA 373 GJ10183-PA 12..373 17..381 1364 70.7 Plus
Dvir\GJ22883-PA 369 GJ22883-PA 11..369 21..379 985 51.9 Plus
Dvir\Rh4-PA 383 GJ11339-PA 10..364 14..365 600 39.7 Plus
Dvir\Rh3-PA 381 GJ23441-PA 16..351 19..352 587 39.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Rh2-PA 375 GK22745-PA 2..375 8..381 1884 93.3 Plus
Dwil\ninaE-PA 373 GK22808-PA 9..373 14..381 1350 69.6 Plus
Dwil\GK11464-PA 369 GK11464-PA 13..369 23..379 986 52.8 Plus
Dwil\Rh4-PA 380 GK13877-PA 16..352 21..352 592 39.8 Plus
Dwil\Rh3-PA 388 GK22792-PA 26..359 21..352 585 39.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25563-PA 381 GE25563-PA 1..381 1..381 2001 97.6 Plus
Dyak\GE25107-PA 373 GE25107-PA 9..373 14..381 1350 69.6 Plus
Dyak\GE24316-PA 369 GE24316-PA 7..369 18..379 980 52.2 Plus
Dyak\GE14711-PA 127 GE14711-PA 1..127 255..381 641 95.3 Plus
Dyak\GE22185-PA 378 GE22185-PA 13..350 19..352 613 41.5 Plus