Clone FI21838 Report

Search the DGRC for FI21838

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:218
Well:38
Vector:pFlc-1
Associated Gene/TranscriptCG14883-RA
Protein status:FI21838.pep: gold
Sequenced Size:1860

Clone Sequence Records

FI21838.complete Sequence

1860 bp assembled on 2013-07-17

GenBank Submission: BT150166.1

> FI21838.complete
GTGATAAGCCCAAGCAGCGATAGAAAACTGGCTGAGAAAATGTACGCTCC
TTTTTTGCGAAATTTGATTTGTGTTTTCGACGGCTATTATTGAAAGAATC
TATTAGAACAGTGGCCCTTTGATATAAAGAAATCGAAGCAAACTGCGCGG
AATAGAAAGTTTCAACACAATCAAAGAAACGGTGCATAATCGAAAGTATC
CAAGGAGGGAGTGGCAAGTGGTGCACTAACGGGTGGTGGTGGCGGCACGC
ATTCTATTTAGGTTCTCTGCTGAATGTCCTATTGGCGTTTGTTGTGGCTG
GCGCTCAAAATGATTTACCAGCTGCTGTGCTGCTCCGTGAGTCTGATCTT
CTTCTGCTTCAACGTATTCTGGCTCTTTTGCAACCTGGCCATCCCGTGGT
GCACTCTTACCTTGCTCGTTGTGTGCATCGCCTCCAAGTTCGTCAAACTG
CAACGAAGTCCCAACGAGAAGCGACTCCTAAGCCTTCTGAGTTCTCCAGA
GGAATGGCCCAGTTACTGGCCAATCGCCAACCGGGCAGCCGGCTTTGATG
CGCCCGAAAACTCCAAGGCAGCCATTAAGAAGTGCCTCGCACGTGGATAT
CGGAACGTGCTTCTGGATGCCGGCCTCACGTCCTGTGGTGAAATAGTCGT
GGCTAACCCCACAAAAATAAACGTTGCACAGCCGCTTGTGGAGTTGCAAA
AGCTAAACATCACGGAGCAACACCCGATGGGGTCGCAGTACGAAGCGGAA
ACGGTGGCTCCCCTCAGGCAATTGTCCGATTTCCTGGAGGCAGAGGCTGC
TGAGACCACAGTGTTTTTGCGTCTGCACGACAACAGCGCCAGGATGATAA
ACGAACTGCAGAAGTTTATGACTGCTGACGAGTCGTTCACCCAGCGCACA
ATTGTCATCAGTCGATCACCACTAGCGATTTACCAGCTCCGAAAACTTAA
GCCCGAAATAATTTGTGGCCTTTGGCACGAGACCTATTTGTCACTGGCCA
TCCTCAAGTCTTCTACACTTATTACCTCAATCTATGGCGCTATTTTTCGC
AACATAATTGCACCCGTGATAGGAATAAGCGTAGTTTTTCTCAGCAAAGA
TGAGATTAACTTCCACATTGCCGATCTTTGGCGCAACGTGGGTGTCCGTC
CAATAGTCTATATGGTTAACTCACCCAACGAGAAAAGATACTTCCAAAAG
ACCATGAAGATCCAGTACCTTACAGACTCGTTGCGGTCAGAGCCGCACCT
ACTTATGAAAGCCTAAGAGTCCTTCAGGATTTGAACGAACGATAACGACT
TAGATCGACGCACACACATACACAAACTGTTTGCATTTAGCTGGCAGAGC
TTAGCCCTTAAGACAAACTTAAGTACGCATGTGTTTTTGTAGAAGCTTTA
GAAAGTATTATCCCAAGCTTACCGGTACCAGTGAAATGGAAGATATAATT
TAGATAGTTTATGTGCTTTACTTTTGTTTACCTGAAGCTTTTATTCATTT
TATTGACGTCCTAATTTATTGATGTTGTTATTTATGGTTTTCTTTTGTTT
AACGACTCCTGTATTTGATACGAAAATGTTCTCAAATATTTGTATGATGT
ACTATATTTCTACTATGTACTCAACACAATCATATGCCTTATATGGTGTA
TGATTTTTGGATGCTATATATACATACAACAAGCTTTCCTCAATTCCCCT
TGTTACCCGAATGTATTCCATCAAATCCCTACAAAATGTTTACCAGCATT
ATATGTATATGTCTATACCAAAAACCAGAATTAAAAACTACTTTTATTGT
GATTATAAAAGAAAATAAAGATGATTGCAACGATTGAAAAAACAAAAAAA
AAAAAAAAAA

FI21838.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12282197..12282921 1113..1837 3610 99.9 Plus
chr3R 27901430 chr3R 12281086..12281406 262..582 1590 99.7 Plus
chr3R 27901430 chr3R 12280741..12281002 1..262 1310 100 Plus
chr3R 27901430 chr3R 12281688..12281893 731..936 1030 100 Plus
chr3R 27901430 chr3R 12281951..12282129 934..1112 895 100 Plus
chr3R 27901430 chr3R 12281481..12281633 581..733 765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16457510..16458234 1113..1837 3625 100 Plus
3R 32079331 3R 16456399..16456719 262..582 1605 100 Plus
3R 32079331 3R 16456054..16456315 1..262 1310 100 Plus
3R 32079331 3R 16457001..16457206 731..936 1030 100 Plus
3R 32079331 3R 16457264..16457442 934..1112 895 100 Plus
3R 32079331 3R 16456794..16456946 581..733 765 100 Plus
Blast to na_te.dros performed on 2019-03-15 11:18:13 has no hits.

FI21838.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:19:06 Download gff for FI21838.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12281954..12282129 937..1112 100 -> Plus
chr3R 12280741..12281002 1..262 100 -> Plus
chr3R 12281087..12281406 263..582 99 -> Plus
chr3R 12281483..12281631 583..731 100 -> Plus
chr3R 12281689..12281893 732..936 100 -> Plus
chr3R 12282197..12282926 1113..1843 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2013-07-17 16:29:15 Download gff for FI21838.complete
Subject Subject Range Query Range Percent Splice Strand
CG14883-RA 1..993 274..1266 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:26:43 Download gff for FI21838.complete
Subject Subject Range Query Range Percent Splice Strand
CG14883-RA 1..993 274..1266 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:29:35 Download gff for FI21838.complete
Subject Subject Range Query Range Percent Splice Strand
CG14883-RA 1..993 274..1266 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-07-17 16:29:15 Download gff for FI21838.complete
Subject Subject Range Query Range Percent Splice Strand
CG14883-RA 1..1836 1..1836 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:26:43 Download gff for FI21838.complete
Subject Subject Range Query Range Percent Splice Strand
CG14883-RA 3..1838 1..1836 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:35 Download gff for FI21838.complete
Subject Subject Range Query Range Percent Splice Strand
CG14883-RA 3..1838 1..1836 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:19:06 Download gff for FI21838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16456054..16456315 1..262 100 -> Plus
3R 16457267..16457442 937..1112 100 -> Plus
3R 16456400..16456719 263..582 100 -> Plus
3R 16456796..16456944 583..731 100 -> Plus
3R 16457002..16457206 732..936 100 -> Plus
3R 16457510..16458239 1113..1843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:19:06 Download gff for FI21838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16456054..16456315 1..262 100 -> Plus
3R 16457267..16457442 937..1112 100 -> Plus
3R 16456400..16456719 263..582 100 -> Plus
3R 16456796..16456944 583..731 100 -> Plus
3R 16457002..16457206 732..936 100 -> Plus
3R 16457510..16458239 1113..1843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:19:06 Download gff for FI21838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16456054..16456315 1..262 100 -> Plus
3R 16457267..16457442 937..1112 100 -> Plus
3R 16456400..16456719 263..582 100 -> Plus
3R 16456796..16456944 583..731 100 -> Plus
3R 16457002..16457206 732..936 100 -> Plus
3R 16457510..16458239 1113..1843 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:26:43 Download gff for FI21838.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12281776..12282037 1..262 100 -> Plus
arm_3R 12282122..12282441 263..582 100 -> Plus
arm_3R 12282518..12282666 583..731 100 -> Plus
arm_3R 12282724..12282928 732..936 100 -> Plus
arm_3R 12282989..12283164 937..1112 100 -> Plus
arm_3R 12283232..12283961 1113..1843 99   Plus

FI21838.hyp Sequence

Translation from 273 to 1265

> FI21838.hyp
MSYWRLLWLALKMIYQLLCCSVSLIFFCFNVFWLFCNLAIPWCTLTLLVV
CIASKFVKLQRSPNEKRLLSLLSSPEEWPSYWPIANRAAGFDAPENSKAA
IKKCLARGYRNVLLDAGLTSCGEIVVANPTKINVAQPLVELQKLNITEQH
PMGSQYEAETVAPLRQLSDFLEAEAAETTVFLRLHDNSARMINELQKFMT
ADESFTQRTIVISRSPLAIYQLRKLKPEIICGLWHETYLSLAILKSSTLI
TSIYGAIFRNIIAPVIGISVVFLSKDEINFHIADLWRNVGVRPIVYMVNS
PNEKRYFQKTMKIQYLTDSLRSEPHLLMKA*

FI21838.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14883-PA 330 CG14883-PA 1..330 1..330 1708 100 Plus

FI21838.pep Sequence

Translation from 273 to 1265

> FI21838.pep
MSYWRLLWLALKMIYQLLCCSVSLIFFCFNVFWLFCNLAIPWCTLTLLVV
CIASKFVKLQRSPNEKRLLSLLSSPEEWPSYWPIANRAAGFDAPENSKAA
IKKCLARGYRNVLLDAGLTSCGEIVVANPTKINVAQPLVELQKLNITEQH
PMGSQYEAETVAPLRQLSDFLEAEAAETTVFLRLHDNSARMINELQKFMT
ADESFTQRTIVISRSPLAIYQLRKLKPEIICGLWHETYLSLAILKSSTLI
TSIYGAIFRNIIAPVIGISVVFLSKDEINFHIADLWRNVGVRPIVYMVNS
PNEKRYFQKTMKIQYLTDSLRSEPHLLMKA*

FI21838.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18499-PA 331 GF18499-PA 1..331 1..330 1480 86.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17006-PA 330 GG17006-PA 1..330 1..330 1725 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18288-PA 337 GH18288-PA 2..337 3..330 1416 77.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14883-PA 330 CG14883-PA 1..330 1..330 1708 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24098-PA 337 GI24098-PA 2..337 3..330 1408 76.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22177-PA 330 GL22177-PA 2..330 3..330 1578 87.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13320-PA 330 GA13320-PA 2..330 3..330 1578 87.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15159-PA 330 GM15159-PA 1..330 1..330 1740 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19102-PA 330 GD19102-PA 1..330 1..330 1741 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10916-PA 326 GJ10916-PA 1..326 13..330 1379 77 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14482-PA 330 GK14482-PA 2..330 3..330 1520 84.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24398-PA 330 GE24398-PA 1..330 1..330 1711 97.3 Plus