Clone FI21939 Report

Search the DGRC for FI21939

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:219
Well:39
Vector:pOTB7
Associated Gene/TranscriptCG8102-RB
Protein status:FI21939.pep: gold
Sequenced Size:1508

Clone Sequence Records

FI21939.complete Sequence

1508 bp assembled on 2013-07-17

GenBank Submission: BT150171.1

> FI21939.complete
AGAACATCTCTTTTTTAAGACGACAAAATGTTGCGGCAGAAGCTTAAAAA
CTATTTACCGTCTGTTTGGGAACAGCAACTGCGTCTCGTCCAAACTGCCA
AGAAAGCGGGAGGTAGCAAAAAGCTGGGTCCCGATAGGCCTCCCATTATC
GATCCGCCCAAGGGATATGAGCCCAATTGCAAGACCAAATTTGGTCCGCT
GGACGATTGTGATCGTGTGTTTCAGAATCTCTATGGACGCCACGATTGGC
GCTTGCATGGAGCATGCCAACGTGGGGATTGGCATCGCACCGCTGAGTTG
CTGGAGCAGGGTCCCGAATGGATCATGAAGCAGTGGGAATTTCTACGCCA
GACCAAGTCCGAGAAGGTGCCCAAAATGGTCATCGTGAACTGTGCAGAGG
GAGAGCCCGGAACCTGCAAGGACCGTGATATCCTGCGACATGAACCCCAC
AAACTGATAGAAGGTATCCTTCTGGTAGGTGTGGCCATGGGATGCGGTAG
AGCCATTGTGTACATTCGAAATCGCTTCTACAACGAGGCCTGCAACCTGC
ACTTTGCCTTGGCGGAGGCCTATCATCATGGTTTGTTGGGAAACAGTGTC
TGTGGCACGGGCATCAAGTTCGATGTGATGGTCCAGCGTGGAGATCGGTA
CTTATGTGGCGAGGAAACCGCCATGATCAACTGTTTGATGGGTAAACTGG
GAAGACCACGACGTCGTCCGCCCTTCCTTACGGAAAAGGGCTACTTCGAG
CATCCCTGTTTGGTAATCAATGCCGAGTCGATTGCAGTAGTGCCCACCAT
TCTGCGAAGAGGTTCACAGTGGTGGGCTGGATTGGGTCGCAGTTACAACA
CGGGAACCAAACTTTACTGTCTCAGCGGTCAGGTGAATAATCCCTGCACT
GTGGAGGAAGAAATGTCCATACCCCTGAAGGACCTTATAGAACGACATGC
TGGTGGAGTAAAAGGTGGTTGGGACAATCTCGCAGCAGTATTTCCAGGTG
GTTTGTCCACGCCATTGTTGGATCCATCAACTGCCGGAAAGGTTCTCATG
GATTTCGATAGTTTGACGGATGCAGGCAGTGGTTTCGGGTGCGGAGCGGT
TATTGTGATGACCAAGGACTGTGATCCTCTGGCAATAATGTTGCGATCAA
TTCAGTTTTTCGAAAAGCACACTTGCAAACAGTGCTCCTATTGTCGCGAT
GGTGCCATATGGCTGCCGGAGATATTCGCCCGCTTTGTTAAGGGTCAGAC
ACATCCCCACGAGATCGATTGGACGCTGGTCATTGCCGATAAAATGAGGA
ATAGTAAGCCCATTTGCGCACTCGCTTATAGCCAAGTCAGCGTGGCCGAA
AGTTTGGTGCGAATGTTTAGCCGGAAGATCGAGGAACGCCTTTTAAAATA
TGCCAAGGGATCTTAATATAAGCAGACTATAGAAATTCGTATTCATTTAT
TGATTTTAGGTAAATTGAAATAAATTCTTAATATCTTGGAAAAAAAAAAA
AAAAAAAA

FI21939.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11183962..11185119 1489..332 5745 99.7 Minus
chr2R 21145070 chr2R 11185175..11185507 333..1 1665 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15296762..15297921 1491..332 5605 98.9 Minus
2R 25286936 2R 15297977..15298309 333..1 1665 100 Minus
Blast to na_te.dros performed on 2019-03-15 11:18:22 has no hits.

FI21939.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:19:10 Download gff for FI21939.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11183962..11185117 334..1489 99 <- Minus
chr2R 11185175..11185507 1..333 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2013-07-17 16:36:12 Download gff for FI21939.complete
Subject Subject Range Query Range Percent Splice Strand
CG8102-RB 1..1389 28..1416 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:26:49 Download gff for FI21939.complete
Subject Subject Range Query Range Percent Splice Strand
CG8102-RB 1..1389 28..1416 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:29:44 Download gff for FI21939.complete
Subject Subject Range Query Range Percent Splice Strand
CG8102-RB 1..1389 28..1416 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-07-17 16:36:12 Download gff for FI21939.complete
Subject Subject Range Query Range Percent Splice Strand
CG8102-RB 21..1509 1..1489 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:26:49 Download gff for FI21939.complete
Subject Subject Range Query Range Percent Splice Strand
CG8102-RB 21..1509 1..1489 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:44 Download gff for FI21939.complete
Subject Subject Range Query Range Percent Splice Strand
CG8102-RB 21..1509 1..1489 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:19:10 Download gff for FI21939.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15296764..15297919 334..1489 98 <- Minus
2R 15297977..15298309 1..333 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:19:10 Download gff for FI21939.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15296764..15297919 334..1489 98 <- Minus
2R 15297977..15298309 1..333 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:19:10 Download gff for FI21939.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15296764..15297919 334..1489 98 <- Minus
2R 15297977..15298309 1..333 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:26:49 Download gff for FI21939.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11184269..11185424 334..1489 98 <- Minus
arm_2R 11185482..11185814 1..333 100   Minus

FI21939.hyp Sequence

Translation from 27 to 1415

> FI21939.hyp
MLRQKLKNYLPSVWEQQLRLVQTAKKAGGSKKLGPDRPPIIDPPKGYEPN
CKTKFGPLDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIM
KQWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLV
GVAMGCGRAIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDV
MVQRGDRYLCGEETAMINCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAE
SIAVVPTILRRGSQWWAGLGRSYNTGTKLYCLSGQVNNPCTVEEEMSIPL
KDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPSTAGKVLMDFDSLTDAG
SGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLPEIF
ARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRK
IEERLLKYAKGS*

FI21939.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8102-PB 462 CG8102-PB 1..462 1..462 2512 100 Plus
CG8102-PA 481 CG8102-PA 1..481 1..462 2482 96 Plus
CG9140-PB 474 CG9140-PB 35..470 43..460 1127 49.8 Plus
CG9140-PA 474 CG9140-PA 35..470 43..460 1127 49.8 Plus
CG11423-PA 702 CG11423-PA 221..677 23..459 1108 47.9 Plus

FI21939.pep Sequence

Translation from 27 to 1415

> FI21939.pep
MLRQKLKNYLPSVWEQQLRLVQTAKKAGGSKKLGPDRPPIIDPPKGYEPN
CKTKFGPLDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIM
KQWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLV
GVAMGCGRAIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDV
MVQRGDRYLCGEETAMINCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAE
SIAVVPTILRRGSQWWAGLGRSYNTGTKLYCLSGQVNNPCTVEEEMSIPL
KDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPSTAGKVLMDFDSLTDAG
SGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLPEIF
ARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRK
IEERLLKYAKGS*

FI21939.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11875-PA 520 GF11875-PA 68..508 41..462 1807 72.3 Plus
Dana\GF15407-PA 477 GF15407-PA 46..470 54..460 1121 49.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22361-PA 481 GG22361-PA 1..481 1..462 2355 90.6 Plus
Dere\GG10139-PA 474 GG10139-PA 46..470 54..460 1107 49.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21461-PA 546 GH21461-PA 80..544 15..460 1427 56.4 Plus
Dgri\GH25296-PA 833 GH25296-PA 80..461 15..376 1230 58.8 Plus
Dgri\GH10936-PA 476 GH10936-PA 45..469 54..460 1115 49.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
ND-51L2-PB 462 CG8102-PB 1..462 1..462 2512 100 Plus
ND-51L2-PA 481 CG8102-PA 1..481 1..462 2482 96 Plus
ND-51-PB 474 CG9140-PB 35..470 43..460 1127 49.8 Plus
ND-51-PA 474 CG9140-PA 35..470 43..460 1127 49.8 Plus
ND-51L1-PA 702 CG11423-PA 221..677 23..459 1108 47.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19938-PA 470 GI19938-PA 57..470 44..460 1492 64.5 Plus
Dmoj\GI13499-PA 476 GI13499-PA 45..471 54..462 1116 49.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11014-PA 445 GL11014-PA 27..444 42..460 1709 72.6 Plus
Dper\GL19080-PA 477 GL19080-PA 34..470 38..460 1124 49.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20825-PA 445 GA20825-PA 27..444 42..460 1709 72.8 Plus
Dpse\GA21571-PA 477 GA21571-PA 34..470 38..460 1124 49.9 Plus
Dpse\GA30486-PA 648 GA30486-PA 200..635 38..455 1080 47.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20146-PA 481 GM20146-PA 1..481 1..462 2436 94.8 Plus
Dsec\GM17964-PA 435 GM17964-PA 35..431 54..460 885 44 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25625-PA 481 GD25625-PA 1..481 1..462 2434 94.8 Plus
Dsim\GD22602-PA 499 GD22602-PA 46..495 54..460 921 43.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15106-PA 501 GJ15106-PA 63..494 43..458 1441 60.9 Plus
Dvir\GJ12140-PA 476 GJ12140-PA 45..469 54..460 1120 49.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15392-PA 478 GK15392-PA 46..469 54..459 1121 50 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12249-PA 481 GE12249-PA 1..481 1..462 2359 91.5 Plus
Dyak\GE18950-PA 474 GE18950-PA 46..470 54..460 1117 49.9 Plus