Clone FI21943 Report

Search the DGRC for FI21943

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:219
Well:43
Vector:pOTB7
Associated Gene/TranscriptCG42556-RA
Protein status:FI21943.pep: gold
Sequenced Size:1356

Clone Sequence Records

FI21943.complete Sequence

1356 bp assembled on 2013-09-25

GenBank Submission: BT150364.1

> FI21943.complete
CTTCAGACTTTCTTCTATTAAAGCCGATTTTTTTATTTGATACTCAAGGT
CCAGCGTTCAATGAAGACGATCATAAAGGCCATTATCCACTCTATATAAA
GACAACCATATTTTGGGAATGGTATACTTTAGCATTAATTAAAAATTATC
AAATCCGACGGGGCACACATGAAAGCTGTCAGTCGTTCGTTCTAAGACGC
AGTCATTAAACAAATCATCAAAATTTCCCTTATCCTCAAAGATTTGCGGA
GTACAATCATTTTCTTGGTGTGCAGTCACTCAAGAAAAGACGCAAAGAGA
ATCTGAATACTCGAGGAACCTTGCAACTGCGACAACCATCCACGTCCAAC
CATCCATATTCAGATATGCAGGCTTTGCGAACGGTGATTCAAGGCCTCTC
GACGCGACATGGCCAGATTATATCCCACATACGGAGATCCAGTGGGAGCA
GTAGCTTTCCCGAGTTGGCATTTTTCGACGACCTCGACGACATGGAGCCG
GAGGATGAGGAGGGAGTGATGAATCATCAGTATCCCATCCTTCACAGCCG
CCACTCTGATCTGTTCTACATGCCAAACTGCGTGGGTCCAGCTTATCAGG
GTCTTATTTCTTCGTTGGATCAGCCTTATACCACCGACTGCTATATGGCC
GATGAACAGACTTTGGTGAAGGAAAACGATAGCATTCACGATACCATTCT
CGAGTCTTTGGTAGCACCTACCGAAATGTGTGTGGTGGCTTGCCCCAAGT
TGCTGTTGACCTACATGCGTCGCCTGTTCCAGCATCCGTATGCCCGCTTT
GGCAGCTCGATGAACTTCAGCATGATTGGATTGCGATTCAAGGACAAAGA
TGCTAACAAAGCCCTAACCTCTTTCGTTCACTTCGCCAGCTACAATTCGC
GTGAGATCATGGATAATGGTTATTGGGCGGACTTTATTAATCCCTTGACT
GGTCGCGCTTACTACCGCGCCGCCCACTGTATCCGGAAGCAGGGCCTGGA
GGCCCAGCTCCTTGGCCGTGGCTTAAACCTTACCTTTGCCAATGGCTGCA
CCATCATTGGGGAGGAGCAGAGTGACCAGTTAACCGGTTTCATATTCACA
GACACACCCTGCAAGGTCCTCGAGTCGTGGTTTTCGTAGGGAGGAAATCA
AGGAATCCATGCACAGCTGCCCATTTAAATGTCTCTGATTGTGTACACAT
TAAAGTCCAGTTGAAAAACCGTGTCCACTGCCATATTCAAGAGGGATATT
TTATAAAATTTTACGTATTTCTCGGACTTTCTCATTTTGGTTATAATTAT
GAAAAATATTCGCATCTGTAAAGTAAATTTGAAAAAAAAAAAAAAAAAAA
AAAAAA

FI21943.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16888565..16889896 1..1331 6565 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16889908..16891243 1..1335 6585 99.7 Plus
Blast to na_te.dros performed 2019-03-17 00:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 6174..6305 20..155 137 60.6 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 3171..3320 19..174 123 58.3 Plus
accord 7404 accord ACCORD 7404bp 2041..2093 1331..1278 114 70.4 Minus

FI21943.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:35:15 Download gff for FI21943.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16888565..16889896 1..1331 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-09-25 10:54:44 Download gff for FI21943.complete
Subject Subject Range Query Range Percent Splice Strand
CG42556-RA 1..774 366..1139 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:30:37 Download gff for FI21943.complete
Subject Subject Range Query Range Percent Splice Strand
CG42556-RA 1..774 366..1139 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-25 10:54:44 Download gff for FI21943.complete
Subject Subject Range Query Range Percent Splice Strand
CG42556-RA 1..1332 1..1331 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:37 Download gff for FI21943.complete
Subject Subject Range Query Range Percent Splice Strand
CG42556-RA 1..1332 1..1331 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:35:15 Download gff for FI21943.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16889908..16891239 1..1331 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:35:15 Download gff for FI21943.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16889908..16891239 1..1331 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:35:15 Download gff for FI21943.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16889908..16891239 1..1331 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-25 10:54:44 Download gff for FI21943.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16889908..16891239 1..1331 99   Plus

FI21943.pep Sequence

Translation from 365 to 1138

> FI21943.pep
MQALRTVIQGLSTRHGQIISHIRRSSGSSSFPELAFFDDLDDMEPEDEEG
VMNHQYPILHSRHSDLFYMPNCVGPAYQGLISSLDQPYTTDCYMADEQTL
VKENDSIHDTILESLVAPTEMCVVACPKLLLTYMRRLFQHPYARFGSSMN
FSMIGLRFKDKDANKALTSFVHFASYNSREIMDNGYWADFINPLTGRAYY
RAAHCIRKQGLEAQLLGRGLNLTFANGCTIIGEEQSDQLTGFIFTDTPCK
VLESWFS*

FI21943.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 01:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14778-PA 2023 GF14778-PA 58..302 1..251 775 59.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 01:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21069-PA 2028 GG21069-PA 63..309 1..251 988 76.5 Plus
Dere\GG18995-PA 285 GG18995-PA 57..266 25..248 155 28.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 01:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11695-PA 1958 GH11695-PA 47..242 52..252 325 36.8 Plus
Dgri\GH17752-PA 284 GH17752-PA 47..260 20..248 174 26.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG42556-PA 257 CG42556-PA 1..257 1..257 1367 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 01:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17139-PA 1984 GI17139-PA 44..261 17..248 406 39.5 Plus
Dmoj\GI15506-PA 288 GI15506-PA 74..264 38..248 168 29.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 01:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20349-PA 284 GL20349-PA 71..261 38..248 178 27.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 01:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11412-PA 284 GA11412-PA 71..261 38..248 173 27.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 01:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17219-PA 2010 GM17219-PA 44..290 1..251 1139 86.9 Plus
Dsec\GM13671-PA 284 GM13671-PA 88..265 59..248 147 24.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 01:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24093-PA 2003 GD24093-PA 44..283 1..251 1121 82.9 Plus
Dsim\GD16078-PA 284 GD16078-PA 88..265 59..248 148 26.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 01:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16181-PA 1978 GJ16181-PA 47..260 24..252 410 41.1 Plus
Dvir\GJ19266-PA 288 GJ19266-PA 27..264 3..248 172 26.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 01:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19083-PA 250 GK19083-PA 21..245 22..256 276 33.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 01:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17406-PA 285 GE17406-PA 57..266 25..248 156 27.6 Plus

FI21943.hyp Sequence

Translation from 365 to 1138

> FI21943.hyp
MQALRTVIQGLSTRHGQIISHIRRSSGSSSFPELAFFDDLDDMEPEDEEG
VMNHQYPILHSRHSDLFYMPNCVGPAYQGLISSLDQPYTTDCYMADEQTL
VKENDSIHDTILESLVAPTEMCVVACPKLLLTYMRRLFQHPYARFGSSMN
FSMIGLRFKDKDANKALTSFVHFASYNSREIMDNGYWADFINPLTGRAYY
RAAHCIRKQGLEAQLLGRGLNLTFANGCTIIGEEQSDQLTGFIFTDTPCK
VLESWFS*

FI21943.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG42556-PA 257 CG42556-PA 1..257 1..257 1367 100 Plus