Clone FI21946 Report

Search the DGRC for FI21946

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:219
Well:46
Vector:pOTB7
Associated Gene/TranscriptCG12035-RA
Protein status:FI21946.pep: gold
Sequenced Size:1276

Clone Sequence Records

FI21946.complete Sequence

1276 bp assembled on 2013-07-17

GenBank Submission: BT150159.1

> FI21946.complete
GTCGGATGAGTTTATGACGTAAAGCTTTTTCCGGGTCGTAGCCACCGGTC
CAGGGTAGTCCAGTCTAAAAGTAGAAAATTTCCAACACAGTCAGAAATTG
AAAGCTGCTTAATATCCCCAGAGGTGCCAGGAATTCGATTCTTCTATAAA
TCAAGAGCGCAGCAGTAGAGGATGCACAACCAACGTTCACCCTTCAATGG
AGGCCCGGGAGGATTCGGAGCCAGTGCCTTCAACTTCAATGCACCACAGT
TCGGCGACGGCGCTGCGTTCTCCGAGGGTCTCAACGGGATGCCCTTTCTG
GGCAAGATGCCCACCGAACCGATGATGCGCTCCATTAGCCGCCAACGCTC
GCTGGTTGATGGGGCTGGGCTACCCAAGATGCCGGCACCTCTTCCCGCGA
TGGCCCAGCAAATCTTGAGCGGCGCCGGAGTGGGACGTAGTCAACGCTTC
CCAGTGCCACCTATCTCCACTTACTATGGGCACTACGAGGGCGACTTTTC
GATGTCTTCAATGTCAAAGCTAAAGGACACTGCCTCACCCCCACAGACCC
AATGGCAGGAGCATAAAACACCGCGTCTAGCCGCACTTTCAGAAACCGAC
TCCGAGAGCGACATATGCAGTCAGCAGAACAGAGCGAAATTGCCTGAATC
CCGTTGGCGCCGTGCCATTAACTACGTAACGGCCGCTCTGCCGGAGCAAC
AGCGCCAACGCATGGAGGTGATGGTCAAGCGCTGTGGCCAGTCGGCTATC
GCCAAGCATCTTCTGTTGGTGCTGCATCTGATCGCCCTGGTGGTGGTTGT
GTGTTTCCGCCAGGTCGCGCGACTTGGATGGCTCTGCGGCGACATTCGCT
CTCGCCTAGGACGCGTCAAGTACCAGTCGCGCAGCTACCTGCGCCACATG
CTGTGGCGGCTGGCCATTGCCAAGAGTAACGACACCTTTCTCTTTCTCAT
CGTGGTGCTGGTGACGCCCTGGCTATTCCTTCTCAGCCTTGTCGGCTTCG
CCATATCCTTCGTCTTCTCCATGAGGACCACGTTGGCAGAGGGAGTCCGT
CAGCTGCGCCGTCGCGTATTTTAGACCATAAGTGGAGGGAAATGGCTTTA
GGAGCAGCACCCACAAGCTCCATCGCCCCCAAGTTATCACACAAGGACAC
TAAAGCAGCGCATTCCACAAAATAACACATGACATACAGCAAGATGAAAC
CACTCGAATTTTAACTATATTTTGTGTTGCAGCAACGAAATAGAACTCAA
GTAACGTTAAAAAAAAAAAAAAAAAA

FI21946.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1723950..1725207 1..1258 6275 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1724390..1725647 1..1258 6275 99.9 Plus
Blast to na_te.dros performed on 2019-03-15 11:18:37 has no hits.

FI21946.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:19:18 Download gff for FI21946.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1723950..1725207 1..1258 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2013-07-17 17:11:35 Download gff for FI21946.complete
Subject Subject Range Query Range Percent Splice Strand
CG12035-RA 1..903 172..1074 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:26:59 Download gff for FI21946.complete
Subject Subject Range Query Range Percent Splice Strand
CG12035-RA 1..903 172..1074 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:30:00 Download gff for FI21946.complete
Subject Subject Range Query Range Percent Splice Strand
CG12035-RA 1..903 172..1074 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-07-17 17:11:35 Download gff for FI21946.complete
Subject Subject Range Query Range Percent Splice Strand
CG12035-RA 1..1258 1..1258 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:26:59 Download gff for FI21946.complete
Subject Subject Range Query Range Percent Splice Strand
CG12035-RA 1..1258 1..1258 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:00 Download gff for FI21946.complete
Subject Subject Range Query Range Percent Splice Strand
CG12035-RA 1..1258 1..1258 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:19:18 Download gff for FI21946.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1724390..1725647 1..1258 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:19:18 Download gff for FI21946.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1724390..1725647 1..1258 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:19:18 Download gff for FI21946.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1724390..1725647 1..1258 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:26:59 Download gff for FI21946.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1724390..1725647 1..1258 99   Plus

FI21946.pep Sequence

Translation from 171 to 1073

> FI21946.pep
MHNQRSPFNGGPGGFGASAFNFNAPQFGDGAAFSEGLNGMPFLGKMPTEP
MMRSISRQRSLVDGAGLPKMPAPLPAMAQQILSGAGVGRSQRFPVPPIST
YYGHYEGDFSMSSMSKLKDTASPPQTQWQEHKTPRLAALSETDSESDICS
QQNRAKLPESRWRRAINYVTAALPEQQRQRMEVMVKRCGQSAIAKHLLLV
LHLIALVVVVCFRQVARLGWLCGDIRSRLGRVKYQSRSYLRHMLWRLAIA
KSNDTFLFLIVVLVTPWLFLLSLVGFAISFVFSMRTTLAEGVRQLRRRVF
*

FI21946.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24828-PA 340 GF24828-PA 1..340 1..300 633 49 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14818-PA 303 GG14818-PA 1..303 1..300 1045 73.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15965-PA 319 GH15965-PA 155..310 140..289 169 34.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12035-PA 300 CG12035-PA 1..300 1..300 1555 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16616-PA 375 GI16616-PA 208..370 137..296 316 38.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11354-PA 334 GA11354-PA 5..329 1..296 263 26.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14439-PA 300 GM14439-PA 1..300 1..300 1233 87 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13641-PA 300 GD13641-PA 1..300 1..300 1236 87.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12873-PA 415 GJ12873-PA 247..414 137..300 323 42.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17116-PA 333 GK17116-PA 1..332 1..299 445 33.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21181-PA 305 GE21181-PA 17..305 17..300 1072 74 Plus

FI21946.hyp Sequence

Translation from 171 to 1073

> FI21946.hyp
MHNQRSPFNGGPGGFGASAFNFNAPQFGDGAAFSEGLNGMPFLGKMPTEP
MMRSISRQRSLVDGAGLPKMPAPLPAMAQQILSGAGVGRSQRFPVPPIST
YYGHYEGDFSMSSMSKLKDTASPPQTQWQEHKTPRLAALSETDSESDICS
QQNRAKLPESRWRRAINYVTAALPEQQRQRMEVMVKRCGQSAIAKHLLLV
LHLIALVVVVCFRQVARLGWLCGDIRSRLGRVKYQSRSYLRHMLWRLAIA
KSNDTFLFLIVVLVTPWLFLLSLVGFAISFVFSMRTTLAEGVRQLRRRVF
*

FI21946.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12035-PA 300 CG12035-PA 1..300 1..300 1555 100 Plus