Clone FI21960 Report

Search the DGRC for FI21960

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:219
Well:60
Vector:pOTB7
Associated Gene/TranscriptCG8204-RA
Protein status:FI21960.pep: gold
Sequenced Size:732

Clone Sequence Records

FI21960.complete Sequence

732 bp assembled on 2013-07-18

GenBank Submission: BT150184.1

> FI21960.complete
TTTTGTTTTCTCACTAAATTAACATGCAGCCCCGCGATCTTATGCGCATT
TTAATATTATTCTGCTTGCGTTTTGCATTTAACTTTTTGATTGTTTACCT
CCAAAAACATAACGCCGTTCCAGTGGAGCAGAAACGGCTTGGAACCCTCG
ATAGAGGCAAAAGCTGGAGGCTATAAAACTCGCACAGCTGAGTTTTATTT
TGCACGCGACATTGAATTTGATGAGATGGAAAAATGCATTATTTGCGTAG
ATAACTTGAGAAAATACAAGTGCAGCAAATGCTCGGCACCCTACTGCTCT
GTGGCTTGTTATAAGACACACAGGGATTCGCCCCAATGTGCGACAAGGGA
GTCCGACTTGAAAAAGACTGAAGTTGGCTACCAGGAGGAACCTACGCTTC
ATGTGCCCTTCCCCACCGACGACACAGTTGCCGCGGAGAAGCTCCAGCAA
CTAGAAAACTGCCAGGAACTGCGTAATTTGCTCCACAATCCACACCTGCG
TTCGCTGCTCCAGCAGATTGATGTGGCCATCAATGCCCAGTCGGCCATGA
TGGCCGCCATGCAGGAGCCACTCTTCGTGGAGTTCGCTAATGCCTGCCTT
CAAGTCGTCGAACCGATGACGGATGCGGAGCGAACTGAATTTGAGTTGTA
CTCCTGAATTGAGTTGATACACAGTCTCAATAAAACTAAGCCTTTATTTT
GTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

FI21960.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11460822..11461114 293..1 1435 99.3 Minus
chr2R 21145070 chr2R 11460300..11460549 702..453 1220 99.2 Minus
chr2R 21145070 chr2R 11460606..11460766 454..294 790 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15573666..15573958 293..1 1465 100 Minus
2R 25286936 2R 15573142..15573393 704..453 1200 98.4 Minus
2R 25286936 2R 15573450..15573610 454..294 805 100 Minus
Blast to na_te.dros performed on 2019-03-15 11:21:15 has no hits.

FI21960.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:22:18 Download gff for FI21960.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11460300..11460547 455..702 99 <- Minus
chr2R 11460606..11460766 294..454 99 <- Minus
chr2R 11460822..11461114 1..293 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2013-07-18 09:03:23 Download gff for FI21960.complete
Subject Subject Range Query Range Percent Splice Strand
CG8204-RA 1..432 226..657 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:27:08 Download gff for FI21960.complete
Subject Subject Range Query Range Percent Splice Strand
CG8204-RA 1..432 226..657 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:30:18 Download gff for FI21960.complete
Subject Subject Range Query Range Percent Splice Strand
CG8204-RA 1..432 226..657 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-07-18 09:03:23 Download gff for FI21960.complete
Subject Subject Range Query Range Percent Splice Strand
CG8204-RA 34..735 1..702 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:27:08 Download gff for FI21960.complete
Subject Subject Range Query Range Percent Splice Strand
CG8204-RA 34..735 1..702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:18 Download gff for FI21960.complete
Subject Subject Range Query Range Percent Splice Strand
CG8204-RA 34..735 1..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:22:18 Download gff for FI21960.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15573144..15573391 455..702 98 <- Minus
2R 15573450..15573610 294..454 100 <- Minus
2R 15573666..15573958 1..293 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:22:18 Download gff for FI21960.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15573144..15573391 455..702 98 <- Minus
2R 15573450..15573610 294..454 100 <- Minus
2R 15573666..15573958 1..293 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:22:18 Download gff for FI21960.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15573144..15573391 455..702 98 <- Minus
2R 15573450..15573610 294..454 100 <- Minus
2R 15573666..15573958 1..293 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:27:08 Download gff for FI21960.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11460649..11460896 455..702 98 <- Minus
arm_2R 11460955..11461115 294..454 100 <- Minus
arm_2R 11461171..11461463 1..293 100   Minus

FI21960.pep Sequence

Translation from 225 to 656

> FI21960.pep
MEKCIICVDNLRKYKCSKCSAPYCSVACYKTHRDSPQCATRESDLKKTEV
GYQEEPTLHVPFPTDDTVAAEKLQQLENCQELRNLLHNPHLRSLLQQIDV
AINAQSAMMAAMQEPLFVEFANACLQVVEPMTDAERTEFELYS*

FI21960.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13380-PA 147 GF13380-PA 1..145 1..141 512 69.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22343-PA 143 GG22343-PA 1..143 1..143 707 93 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22970-PA 145 GH22970-PA 3..145 4..143 445 62.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8204-PB 143 CG8204-PB 1..143 1..143 759 100 Plus
CG8204-PA 143 CG8204-PA 1..143 1..143 759 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18456-PA 145 GI18456-PA 2..145 3..143 413 57.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11866-PA 146 GL11866-PA 2..146 3..143 439 61.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20895-PA 146 GA20895-PA 2..146 3..143 445 62.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20131-PA 143 GM20131-PA 1..143 1..143 721 94.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25608-PA 143 GD25608-PA 1..143 1..143 717 93.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21543-PA 145 GJ21543-PA 2..145 3..143 450 63.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17963-PA 146 GK17963-PA 2..146 3..143 458 62.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14144-PA 143 GE14144-PA 1..143 1..143 699 90.2 Plus

FI21960.hyp Sequence

Translation from 225 to 656

> FI21960.hyp
MEKCIICVDNLRKYKCSKCSAPYCSVACYKTHRDSPQCATRESDLKKTEV
GYQEEPTLHVPFPTDDTVAAEKLQQLENCQELRNLLHNPHLRSLLQQIDV
AINAQSAMMAAMQEPLFVEFANACLQVVEPMTDAERTEFELYS*

FI21960.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8204-PB 143 CG8204-PB 1..143 1..143 759 100 Plus
CG8204-PA 143 CG8204-PA 1..143 1..143 759 100 Plus