Clone FI22364 Report

Search the DGRC for FI22364

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:223
Well:64
Vector:pFlc-1|pBS SK-
Associated Gene/TranscriptSyx4-RA
Protein status:FI22364.pep: gold
Sequenced Size:1674

Clone Sequence Records

FI22364.complete Sequence

1674 bp assembled on 2013-07-16

> FI22364.complete
CGTCGAAAACGTATGCGGCGCGGTGAAGACAAAGGAATTGATTTTCAATA
AATCGAATAAAATGTAGCCGAATGTATTTACATGTTAAATTTTAAAAATA
CATAAAGCTAGTTTTTCCCATAATCCAATTTTTTTCTTTTTTGTGTTTGT
GTGTGTGTGCAACAAAAGAGCGAGTAAGAGAGCAAAGAGCCGCCAATAAA
TGGCAAATATGTGATAGGTGATAATCTGTGTTTAGGCCTTTCTGACTGTC
CCTCTCTCTCTCTCTCTCTCTCTCCATGACTTTCCACCCCGCCCTGTCGC
TTTCCGAAGGGCAGACGGTAAATATTAGGCGGCTCTTATCAGAAACTTGT
GCGCTGATAAGCTTTGATAGCAGGTTTCGCTCTCTCCTGCGCTCTCAATC
AAATTTTCCCATTCGCGAACAGCTGTTGGAGGCAACGGCAACAACAAACC
AGGAACAAAGCTCAGAAGCTGCTGTAAAGGATATAAAGTGGACATTTTGG
AGTACTGGAAAGGAATTCAAGGAATTGGCATAAATTTGGCATATAATTGG
CATAATTCAAACCAAAGGCAGTCCAAGTTGCAGAAATGGGTAAAGATCGA
CTGCCCGAGCTTTTGCAGCGCTCATTGAGCACGAACTCGTCGAACTCGTC
GTCGAACGGTTCACTGCTTTTGAACGTGTACAGTGGAACCACGGAGTTCA
TCATTGGCAACACCGGCGGTAACAATAATAGCTACAGTGTCGTTAGCCAA
AACTCTCACAGCTGCAGCAACAATAACAGCAGCACCGAACCCAAGGATCG
GTCCAGTTCAAAGATGACGCAGTATGGCTCGAATGTGGATGACATACTCA
ATCCGTACACGGAGATTCGCCAACAACTCGCACAGATAGCCGCCAACTTG
GAGACGATGAACCGCATGGCCCAAACTGTCAATCTGCGAACTTTCAACGA
GAACGAGATGGATGAGCTTCACAACAAAAACCTGAGGCTGGGCAATCAGC
TAATGACGCGATTCAACGACTTCAAGGCGAATCTGCCGGCGGAAAACGAT
TACAGCTTGGAGGCAAGGATGAAAAGAACCCTTTTCTATGGACTCCACCA
GACTTTCATCAATCTGTGGCACAAAAACGAACTATTCCTGCAGAACTACG
AGACCAAGGTCAAAAAGAATCTGAGACTGCATACAAAAATCATTAATTCT
GAAGCCAGCGAACAAGAAATCGAGTTACTCATCGAGAACAAGACAACCAA
ACTCTTTGTGGATAATTTTCTGCAGGAAACGGAAAAGGAGCGGCAGACAC
TGCGCGAAATGATGGATCGATTCAACGAGCTGCGCCGCCTGGAGAAGTCC
ATCGAGGAGGTGCACGCCCTGTTCATGCGCATCCAGACCCTGGTAATGGA
GCAGAGCGAGGTGATCCAGCGGGTGGAGTTTCACGCCCAGCAGGCCACGC
TCCACGTGGACAAGGGCGCCGACGAGCTGGACCAGGCGGAGCAGCACCAG
AAGAAGGCGCGCAAGAAAAAGATAATGCTCATCGTGATACTCGCAGCCGT
GTTGCTAGTATTACTCCTTGTTGGTATTTATTTGTGATGCACGCGAGAAA
CTTTATTTTTTTGGCCTATTTTTAAAATTTATACGTAAGAAAATAAACTT
TAAAACCCCAAAAAAAAAAAAAAA

FI22364.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2637268..2637881 618..3 3000 99.5 Minus
chrX 22417052 chrX 2633114..2633362 1515..1267 1245 100 Minus
chrX 22417052 chrX 2635402..2635649 1196..949 1210 99.2 Minus
chrX 22417052 chrX 2636378..2636617 855..616 1200 100 Minus
chrX 22417052 chrX 2632908..2633051 1657..1514 720 100 Minus
chrX 22417052 chrX 2635715..2635809 949..855 475 100 Minus
chrX 22417052 chrX 2635240..2635313 1266..1193 370 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2743451..2744066 618..3 3080 100 Minus
X 23542271 X 2739297..2739545 1515..1267 1245 100 Minus
X 23542271 X 2741585..2741832 1196..949 1225 99.6 Minus
X 23542271 X 2742561..2742800 855..616 1200 100 Minus
X 23542271 X 2739087..2739234 1661..1514 725 99.3 Minus
X 23542271 X 2741898..2741992 949..855 475 100 Minus
X 23542271 X 2741423..2741496 1266..1193 370 100 Minus
Blast to na_te.dros performed 2019-03-15 14:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1323..1377 1655..1602 128 72.7 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 5571..5669 1633..1527 112 59.8 Minus

FI22364.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:34:28 Download gff for FI22364.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2632906..2633049 1516..1659 99 <- Minus
chrX 2633114..2633362 1267..1515 100 <- Minus
chrX 2635240..2635313 1193..1266 100 <- Minus
chrX 2635406..2635648 950..1192 99 <- Minus
chrX 2635715..2635808 856..949 100 <- Minus
chrX 2636378..2636614 619..855 100 <- Minus
chrX 2637268..2637881 1..618 95   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2013-07-16 18:06:07 Download gff for FI22364.complete
Subject Subject Range Query Range Percent Splice Strand
Syx4-RA 1..1002 586..1587 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:34:26 Download gff for FI22364.complete
Subject Subject Range Query Range Percent Splice Strand
Syx4-RA 1..1002 586..1587 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:02:36 Download gff for FI22364.complete
Subject Subject Range Query Range Percent Splice Strand
Syx4-RA 1..1002 586..1587 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-07-16 18:06:07 Download gff for FI22364.complete
Subject Subject Range Query Range Percent Splice Strand
Syx4-RA 1..1657 3..1659 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:34:26 Download gff for FI22364.complete
Subject Subject Range Query Range Percent Splice Strand
Syx4-RA 8..1667 1..1659 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:02:36 Download gff for FI22364.complete
Subject Subject Range Query Range Percent Splice Strand
Syx4-RA 8..1667 1..1659 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:34:28 Download gff for FI22364.complete
Subject Subject Range Query Range Percent Splice Strand
X 2742561..2742797 619..855 100 <- Minus
X 2739297..2739545 1267..1515 100 <- Minus
X 2741423..2741496 1193..1266 100 <- Minus
X 2741589..2741831 950..1192 100 <- Minus
X 2741898..2741991 856..949 100 <- Minus
X 2739089..2739232 1516..1659 99 <- Minus
X 2743451..2744066 1..618 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:34:28 Download gff for FI22364.complete
Subject Subject Range Query Range Percent Splice Strand
X 2742561..2742797 619..855 100 <- Minus
X 2739297..2739545 1267..1515 100 <- Minus
X 2741423..2741496 1193..1266 100 <- Minus
X 2741589..2741831 950..1192 100 <- Minus
X 2741898..2741991 856..949 100 <- Minus
X 2739089..2739232 1516..1659 99 <- Minus
X 2743451..2744066 1..618 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:34:28 Download gff for FI22364.complete
Subject Subject Range Query Range Percent Splice Strand
X 2742561..2742797 619..855 100 <- Minus
X 2739297..2739545 1267..1515 100 <- Minus
X 2741423..2741496 1193..1266 100 <- Minus
X 2741589..2741831 950..1192 100 <- Minus
X 2741898..2741991 856..949 100 <- Minus
X 2739089..2739232 1516..1659 99 <- Minus
X 2743451..2744066 1..618 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:34:26 Download gff for FI22364.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2633122..2633265 1516..1659 99 <- Minus
arm_X 2633330..2633578 1267..1515 100 <- Minus
arm_X 2635456..2635529 1193..1266 100 <- Minus
arm_X 2635622..2635864 950..1192 100 <- Minus
arm_X 2635931..2636024 856..949 100 <- Minus
arm_X 2636594..2636830 619..855 100 <- Minus
arm_X 2637484..2638099 1..618 99   Minus

FI22364.hyp Sequence

Translation from 585 to 1586

> FI22364.hyp
MGKDRLPELLQRSLSTNSSNSSSNGSLLLNVYSGTTEFIIGNTGGNNNSY
SVVSQNSHSCSNNNSSTEPKDRSSSKMTQYGSNVDDILNPYTEIRQQLAQ
IAANLETMNRMAQTVNLRTFNENEMDELHNKNLRLGNQLMTRFNDFKANL
PAENDYSLEARMKRTLFYGLHQTFINLWHKNELFLQNYETKVKKNLRLHT
KIINSEASEQEIELLIENKTTKLFVDNFLQETEKERQTLREMMDRFNELR
RLEKSIEEVHALFMRIQTLVMEQSEVIQRVEFHAQQATLHVDKGADELDQ
AEQHQKKARKKKIMLIVILAAVLLVLLLVGIYL*

FI22364.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Syx4-PA 333 CG2715-PA 1..333 1..333 1676 100 Plus
Syx4-PB 257 CG2715-PB 1..257 77..333 1292 100 Plus
Syx1A-PA 291 CG31136-PA 14..278 65..322 267 23.4 Plus
Syx1A-PB 296 CG31136-PB 14..278 65..322 267 23.4 Plus
Syx7-PB 282 CG5081-PB 24..278 96..332 175 25 Plus

FI22364.pep Sequence

Translation from 585 to 1586

> FI22364.pep
MGKDRLPELLQRSLSTNSSNSSSNGSLLLNVYSGTTEFIIGNTGGNNNSY
SVVSQNSHSCSNNNSSTEPKDRSSSKMTQYGSNVDDILNPYTEIRQQLAQ
IAANLETMNRMAQTVNLRTFNENEMDELHNKNLRLGNQLMTRFNDFKANL
PAENDYSLEARMKRTLFYGLHQTFINLWHKNELFLQNYETKVKKNLRLHT
KIINSEASEQEIELLIENKTTKLFVDNFLQETEKERQTLREMMDRFNELR
RLEKSIEEVHALFMRIQTLVMEQSEVIQRVEFHAQQATLHVDKGADELDQ
AEQHQKKARKKKIMLIVILAAVLLVLLLVGIYL*

FI22364.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22480-PA 339 GF22480-PA 1..339 1..333 1290 80.5 Plus
Dana\GF23231-PA 291 GF23231-PA 113..281 157..326 213 28.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18606-PA 332 GG18606-PA 1..332 1..333 1679 96.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12274-PA 318 GH12274-PA 1..318 1..333 1096 73.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
Syx4-PA 333 CG2715-PA 1..333 1..333 1676 100 Plus
Syx4-PB 257 CG2715-PB 1..257 77..333 1292 100 Plus
Syx1A-PC 291 CG31136-PC 14..278 65..322 267 23.4 Plus
Syx1A-PA 291 CG31136-PA 14..278 65..322 267 23.4 Plus
Syx1A-PB 296 CG31136-PB 14..278 65..322 267 23.4 Plus
Syx7-PB 282 CG5081-PB 24..278 96..332 175 25 Plus
Syx7-PA 282 CG5081-PA 24..278 96..332 175 25 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10970-PA 320 GI10970-PA 1..320 1..333 1102 71.5 Plus
Dmoj\GI23434-PA 291 GI23434-PA 113..290 157..333 211 27.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19805-PA 336 GL19805-PA 1..336 1..333 1132 78.3 Plus
Dper\GL24148-PA 291 GL24148-PA 117..281 161..326 211 28.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15445-PA 338 GA15445-PA 75..338 70..333 1122 87.1 Plus
Dpse\GA16036-PA 291 GA16036-PA 117..281 161..326 211 28.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18855-PA 333 GM18855-PA 1..333 1..333 1721 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Syx4-PA 333 GD16354-PA 1..333 1..333 1728 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18528-PA 315 GJ18528-PA 1..315 1..333 1160 73.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25401-PA 316 GK25401-PA 1..315 1..324 1137 75.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Syx4-PA 332 GE16921-PA 1..332 1..333 1697 97.3 Plus