Clone FI22538 Report

Search the DGRC for FI22538

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:225
Well:38
Vector:pFlc-1|pBS SK-
Associated Gene/TranscriptSec10-RA
Protein status:FI22538.pep: gold
Sequenced Size:2413

Clone Sequence Records

FI22538.complete Sequence

2413 bp assembled on 2013-07-18

GenBank Submission: BT150181.1

> FI22538.complete
AATAGTATAGAAAGAAGAAGCAGAAAAGAAACGCCTATTAAATCAGATCA
TTTAAATACGAAAACTTAATAATACATTAAAATGCTATCCCAATACATGG
AGGAGTTTGAACAGGAACCCTTTGAGGTGGGCGAGTTCATAGAGCGTCTG
ACTTGGCGCACCAACAATGAACTCCAGAACAGCGAGGACTTTCATCCTGT
GGCCCTCCACGATACCTTCATCCAGACCATTAAGGACCTAAAGATCCTGC
AGGAGAAGCAACAAAGCAAGTGCGAACGGCTAGAGGAGTCACTGCGCCAG
GAGAAGGAGTCGCACGCCAAAAAGATTGCCAAGCTCCAAGAACGCCACCA
AACGGCCATTGATGTGTTCGGCCAGCTGGACGAAAAAATCAATTCGGTGG
CCGGCAAGATCATGCACCTGGGCGAACAGTTGGAGAATGTGAACACTCCA
CGCAGTCGTTCAGTGGAGGCCCAGAAGTTACTCAATTTTATGTCCGAGTT
TTTAGCCGCTGGCCCTGTGATTGTCAACGATATTTTTGCGGATGCCGCAA
GATTAAGTGAGGCCGCAGATGTGATACAAAAGCTCTACGCTATCTCGCAG
GATCTGCCGCCCGGAAACTTTGCGGAATCCAAAAGAAAAATCGAAAAGAA
ATACGATGAAGTCGAGCGGCGGTTGATCGAAGAGTTTGCCACCGCCCAGA
AGAGCGAGGACATCGAGCGCATGAAGACACTGGCCCAGATCTTGTCCCAG
TTCAAGGGTTACACTCAGTGTGTAGACGCATACATCGAGCAGAGCCAAAT
GCAACCGTACAGTGGCAAAGACATATTTATAGGCATTGTACCGCTATGCA
AGCATCACTACGAGATAATCCAGAAGGTGTTTGCCAATCCGCAGCAGGTT
ATGTCCAAGTTCATACTTAACATATATCAACTGAAGCTTCACCAGTACGC
CATGACTAAGTTGGAGGACAAAAAAGACGAGGAGAAATATCTTCGCACCC
TTTATGAGTTATACTCGCGCACACTAAAATTGTCAACAGATCTTCAAATC
TACATGTCCACGATCGACGACGACTTGTTACAGAAGCTGACACAGCAGAT
TTTTATAAAGCATTTGGCCGGCTACGCCGAAATGGAGACCAAATGCCTCA
CAGCCAAGTGTTCCACAGAGCTGGAAAAGTTCTATGCCAGCAAGAAACAC
CAAAAGACTGCAACTACTAAGGGCTTTCGGAGAAACATGGAGGTGCTGAT
AGCCACGCGGGCTAACATAAATATTGCTGCCATCGAGGACTATGGCGGGG
AGACGTTCCTATCCGAAGAGTTGGCCATCAACATGCTGCAGGAGGCCAAG
GCGTCGCTTAAGCGCTGTCGCCTGCTGTCCAACGAGACCGAACTACCAGG
CAATGCTATAAAGCTAAACGATATCCTTCTTCGTTTCTTGATGCACGAGC
ACGTAGATTACGCACTGGAGTTGGGACTGCAAGCAGTGCCACTGGCCGAG
GGCAGGGTCTTTCCCCAGCTCTACTTCTTTGATGTGGTGCAAAAGACGAA
CATCATTGTCCATCTACTGGACAAGCTGTGCCACACATCTGTCATACCCT
GTGTGAGTAATACACCCAAGTACTCGGACTATGTGTTCAAAAAACGTATT
CTGATGGAGCAAATCGAGACAAAGCTGGACCAGGGTCTTGATCGCTCTAT
TAGCGCTGTTATTGGCTGGGTCAAGGTATATTTGCAATATGAACAAAAGA
AAACGGACTACAAGCCGGAAACAGATGTGGATACAATATCTTCAGCGGCC
TGCTTACAAGTCGTTCAGAATCTGCAGCCCGTGATTGTGCAGATTAAAAA
ATGTGTTGATGGAGAGAATTTGCAGAATGTTCTTACAGAATTTGGAACTC
GGTTGCACCGAGTAATCTACGATCACCTGCAGACCATGCAGTTCAACACG
GCTGGCGCCATGTGTGCCATCTGCGACGTGAACGAGTATCGCAAGTGCAT
TCGCGAGCTGGATAGTCCACTGGTCACGCAGCTGTTTGACATACTGCATG
CATTGTGCAATTTACTACTTGTTAAGCCCCAAAACCTTCAAGAAGTTTGC
ACGGGTGACACTCTGAATTATCTGGACAAGTCGGTGGTGCGGCAATTCAT
TCAGCTGCGCACTGATTTCAGGATCATCAAGAACACCAACTATCTGAAGG
GTATTATTGAGTGAGGAGTTCGACGTCCAGAATGATTCACATTCCAAAAT
TTTCCACCTTCGCTGTCTACGGATTAAATTGATTTATTAAAGGGGACATT
ATCTAATGATGTTTAATTATGGCTTGCCATGTTCTTTAACTTTCAATTAA
AGTCAAGTGGCTGGTTACTTTTATCAATAAAAAAAAAAAAAAAAAATAAA
AAAAAAAAAAAAA

FI22538.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19958332..19959241 110..1019 4520 99.8 Plus
chr3R 27901430 chr3R 19959310..19959898 1019..1607 2915 99.7 Plus
chr3R 27901430 chr3R 19960215..19960533 1797..2115 1565 99.4 Plus
chr3R 27901430 chr3R 19960605..19960869 2115..2379 1325 100 Plus
chr3R 27901430 chr3R 19959955..19960147 1606..1798 965 100 Plus
chr3R 27901430 chr3R 19958163..19958277 1..115 560 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24135002..24135911 110..1019 4550 100 Plus
3R 32079331 3R 24135980..24136568 1019..1607 2945 100 Plus
3R 32079331 3R 24136885..24137203 1797..2115 1595 100 Plus
3R 32079331 3R 24137275..24137539 2115..2379 1325 100 Plus
3R 32079331 3R 24136625..24136817 1606..1798 965 100 Plus
3R 32079331 3R 24134833..24134947 1..115 560 99.1 Plus
Blast to na_te.dros performed on 2019-03-15 11:21:40 has no hits.

FI22538.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:22:32 Download gff for FI22538.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19958163..19958276 1..114 99 -> Plus
chr3R 19958337..19959241 115..1019 99 -> Plus
chr3R 19959311..19959898 1020..1607 99 -> Plus
chr3R 19959957..19960146 1608..1797 100 -> Plus
chr3R 19960216..19960533 1798..2115 99 -> Plus
chr3R 19960606..19960868 2116..2378 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2013-07-18 12:15:06 Download gff for FI22538.complete
Subject Subject Range Query Range Percent Splice Strand
sec10-RA 1..2133 82..2214 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:27:20 Download gff for FI22538.complete
Subject Subject Range Query Range Percent Splice Strand
sec10-RA 1..2133 82..2214 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:30:48 Download gff for FI22538.complete
Subject Subject Range Query Range Percent Splice Strand
Sec10-RA 1..2133 82..2214 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-07-18 12:15:06 Download gff for FI22538.complete
Subject Subject Range Query Range Percent Splice Strand
sec10-RA 1..2378 1..2378 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:27:20 Download gff for FI22538.complete
Subject Subject Range Query Range Percent Splice Strand
sec10-RA 3..2380 1..2378 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:48 Download gff for FI22538.complete
Subject Subject Range Query Range Percent Splice Strand
Sec10-RA 3..2380 1..2378 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:22:32 Download gff for FI22538.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24136886..24137203 1798..2115 100 -> Plus
3R 24134833..24134946 1..114 99 -> Plus
3R 24135007..24135911 115..1019 100 -> Plus
3R 24135981..24136568 1020..1607 100 -> Plus
3R 24136627..24136816 1608..1797 100 -> Plus
3R 24137276..24137538 2116..2378 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:22:32 Download gff for FI22538.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24136886..24137203 1798..2115 100 -> Plus
3R 24134833..24134946 1..114 99 -> Plus
3R 24135007..24135911 115..1019 100 -> Plus
3R 24135981..24136568 1020..1607 100 -> Plus
3R 24136627..24136816 1608..1797 100 -> Plus
3R 24137276..24137538 2116..2378 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:22:32 Download gff for FI22538.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24136886..24137203 1798..2115 100 -> Plus
3R 24134833..24134946 1..114 99 -> Plus
3R 24135007..24135911 115..1019 100 -> Plus
3R 24135981..24136568 1020..1607 100 -> Plus
3R 24136627..24136816 1608..1797 100 -> Plus
3R 24137276..24137538 2116..2378 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:27:20 Download gff for FI22538.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19960555..19960668 1..114 99 -> Plus
arm_3R 19962998..19963260 2116..2378 100   Plus
arm_3R 19962349..19962538 1608..1797 100 -> Plus
arm_3R 19962608..19962925 1798..2115 100 -> Plus
arm_3R 19960729..19961633 115..1019 100 -> Plus
arm_3R 19961703..19962290 1020..1607 100 -> Plus

FI22538.pep Sequence

Translation from 81 to 2213

> FI22538.pep
MLSQYMEEFEQEPFEVGEFIERLTWRTNNELQNSEDFHPVALHDTFIQTI
KDLKILQEKQQSKCERLEESLRQEKESHAKKIAKLQERHQTAIDVFGQLD
EKINSVAGKIMHLGEQLENVNTPRSRSVEAQKLLNFMSEFLAAGPVIVND
IFADAARLSEAADVIQKLYAISQDLPPGNFAESKRKIEKKYDEVERRLIE
EFATAQKSEDIERMKTLAQILSQFKGYTQCVDAYIEQSQMQPYSGKDIFI
GIVPLCKHHYEIIQKVFANPQQVMSKFILNIYQLKLHQYAMTKLEDKKDE
EKYLRTLYELYSRTLKLSTDLQIYMSTIDDDLLQKLTQQIFIKHLAGYAE
METKCLTAKCSTELEKFYASKKHQKTATTKGFRRNMEVLIATRANINIAA
IEDYGGETFLSEELAINMLQEAKASLKRCRLLSNETELPGNAIKLNDILL
RFLMHEHVDYALELGLQAVPLAEGRVFPQLYFFDVVQKTNIIVHLLDKLC
HTSVIPCVSNTPKYSDYVFKKRILMEQIETKLDQGLDRSISAVIGWVKVY
LQYEQKKTDYKPETDVDTISSAACLQVVQNLQPVIVQIKKCVDGENLQNV
LTEFGTRLHRVIYDHLQTMQFNTAGAMCAICDVNEYRKCIRELDSPLVTQ
LFDILHALCNLLLVKPQNLQEVCTGDTLNYLDKSVVRQFIQLRTDFRIIK
NTNYLKGIIE*

FI22538.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16106-PA 710 GF16106-PA 1..710 1..710 3701 96.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11257-PA 710 GG11257-PA 1..710 1..710 3785 99.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18495-PA 710 GH18495-PA 1..710 1..710 3588 94.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
Sec10-PA 710 CG6159-PA 1..710 1..710 3629 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24169-PA 710 GI24169-PA 1..710 1..710 3672 95.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23406-PA 709 GL23406-PA 1..709 1..710 3637 96.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27246-PA 709 GA27246-PA 1..709 1..710 3646 96.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26562-PA 710 GM26562-PA 1..710 1..710 3777 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21067-PA 693 GD21067-PA 1..682 1..682 3627 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14202-PA 710 GJ14202-PA 1..710 1..710 3639 94.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11158-PA 710 GK11158-PA 1..710 1..710 3636 95.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23449-PA 710 GE23449-PA 1..710 1..710 3781 99.3 Plus

FI22538.hyp Sequence

Translation from 81 to 2213

> FI22538.hyp
MLSQYMEEFEQEPFEVGEFIERLTWRTNNELQNSEDFHPVALHDTFIQTI
KDLKILQEKQQSKCERLEESLRQEKESHAKKIAKLQERHQTAIDVFGQLD
EKINSVAGKIMHLGEQLENVNTPRSRSVEAQKLLNFMSEFLAAGPVIVND
IFADAARLSEAADVIQKLYAISQDLPPGNFAESKRKIEKKYDEVERRLIE
EFATAQKSEDIERMKTLAQILSQFKGYTQCVDAYIEQSQMQPYSGKDIFI
GIVPLCKHHYEIIQKVFANPQQVMSKFILNIYQLKLHQYAMTKLEDKKDE
EKYLRTLYELYSRTLKLSTDLQIYMSTIDDDLLQKLTQQIFIKHLAGYAE
METKCLTAKCSTELEKFYASKKHQKTATTKGFRRNMEVLIATRANINIAA
IEDYGGETFLSEELAINMLQEAKASLKRCRLLSNETELPGNAIKLNDILL
RFLMHEHVDYALELGLQAVPLAEGRVFPQLYFFDVVQKTNIIVHLLDKLC
HTSVIPCVSNTPKYSDYVFKKRILMEQIETKLDQGLDRSISAVIGWVKVY
LQYEQKKTDYKPETDVDTISSAACLQVVQNLQPVIVQIKKCVDGENLQNV
LTEFGTRLHRVIYDHLQTMQFNTAGAMCAICDVNEYRKCIRELDSPLVTQ
LFDILHALCNLLLVKPQNLQEVCTGDTLNYLDKSVVRQFIQLRTDFRIIK
NTNYLKGIIE*

FI22538.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Sec10-PA 710 CG6159-PA 1..710 1..710 3629 100 Plus