Clone FI22539 Report

Search the DGRC for FI22539

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:225
Well:39
Vector:pFlc-1|pBS SK-
Associated Gene/TranscriptCG13810-RB
Protein status:FI22539.pep: gold
Sequenced Size:1568

Clone Sequence Records

FI22539.complete Sequence

1568 bp assembled on 2013-07-17

GenBank Submission: BT150174.1

> FI22539.complete
GATTTCGAACTCGCGTTCCGCTTGGAGTAGATGTGCTGTAAATTTCCAAC
CGAATGAGGCTGCCATCGATGGTGGATAACGTGTGGAAGCGTTTCATGGC
CATGTTGTCACTTCCGGATTTGTTGGTCCTCGGCTGTCTGTGGGCCAGTG
GCTTCTCCTTGGGTTACTACGCCAAGTCGGCTTATGTGTACGACAACCTG
TGGCCTCACTGGTACGCCCTGGTGGGCGGGTTGGTGGCCTTGGCTCTAAC
CCTGGGCTGGACCCTCAGAAAGCACAAGAAACAGCAGTACAGCTACGATC
ACTACTATATTATTTTCTATGGGCTTCTCTGCTCGTTGATGGGGAGCTGC
TTCATGCTGACTAGACAGCTGGCTGTTAGTTATTACTTCAGCTTCGTGGG
ATTGAGTGTGCAGTACTTGGCCGGATTTAGTTACGTGAGCCTGCGTTGTG
ATGCCTCAGGATCACGACCGTCCAGAATCGCTTTGGCCAACTCACTGTAT
GCCGGAGGAATGGCCACAGGATTTGTGATTTTCAACGAGATGGAACCGCA
GCGTAGCGGATTGATTGCTCTGGGAATTAATCTGCTCTTACTCTGCCTGG
TTTGTCTAAACGAGCTGCTGCACCATACTGGCTGCATTAACTACAAAGAA
TCAAGGGATTTGGTGTTTAATCTACTCAACGAGGAGAAGATGGTCTTTCT
GCCGCGCCAGGCGATTTTGGCGCAGTTTGTGGACAGAACGGATTACGAAC
TGAAGGAAAGCCGGCAGTGGCTGGTGCTGATCCTGGGAGGATCGCTGGTG
TGCCTCCAGAAGAGCTGCCTTCTCTTCTCACCCACCTACATGCAGCTAAC
GTGGAGCAGCACGGTGGGCTATTTGCAGCAAACCCAGCTCTATATACCCT
TTGTCCTGTACTCGGCTGGCACCAGTTTTGGAGCACTGCTCCTGATGAGA
TACACCCCCAAGTTGGTGTACCTACTCTTCGGACTTATTCAGATAACTTC
GATTGTGGCTCTGCTGTGCATCTACAGCGATGAGCAGTCGGAACACTGTT
TCCTGTTCCTCTGCCTCATATACATCACAATGGGTGTGCTTTCGAGCCAG
GGAATCCACTGGCTCCTGGAGTGCTCACCCTTTCTCCACACAGAGTTGGC
CCTGGCCGCAGGATTCATTCTGCAACTGTGCGTTATGGAGGGCTCCAAAT
ACGAGTCCTACGCCACGGACACATGGATTGCCCTGATAATAGTGAGTGTA
ATCACTCAGGGACTCACTGCCCTGGCCATTCCTGTGGTGCAGTGGCTCCA
GCCGCACTCCGCCAGCCTTGTCGATGTACGCAACCGCCTGCTGGGCATCC
GACGGAAGTCGCTGCCCCCGGAGCAGACCCAGTTCTGGCACACCAACCAC
TTTCTGGCCCACAACAAGCCCGCCAACCAGCTGGAATCCGTGCAGCTGGG
CAGGAGCAGGGTCTTTCAGCAGTATCCGATCAGCGGGAGTGACACCGCGG
AGAACCACAAAGGCGACAAGTTCTGATAATAAAGTGTTGCACTTTAAACC
GCCAAAAAAAAAAAAAAA

FI22539.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2185923..2187104 372..1553 5715 98.9 Plus
chr3L 24539361 chr3L 2185550..2185796 126..372 1190 98.8 Plus
chr3L 24539361 chr3L 2185358..2185482 2..126 625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2186495..2187678 372..1555 5920 100 Plus
3L 28110227 3L 2186122..2186368 126..372 1235 100 Plus
3L 28110227 3L 2185930..2186054 2..126 625 100 Plus
Blast to na_te.dros performed on 2019-03-15 11:17:38 has no hits.

FI22539.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:18:48 Download gff for FI22539.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2185357..2185482 1..126 99 -> Plus
chr3L 2185551..2185796 127..372 98 -> Plus
chr3L 2185924..2187104 373..1553 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2013-07-17 09:51:04 Download gff for FI22539.complete
Subject Subject Range Query Range Percent Splice Strand
CG13810-RA 1..1458 69..1526 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:26:22 Download gff for FI22539.complete
Subject Subject Range Query Range Percent Splice Strand
CG13810-RB 1..1473 54..1526 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:28:59 Download gff for FI22539.complete
Subject Subject Range Query Range Percent Splice Strand
CG13810-RB 1..1473 54..1526 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-07-17 09:51:04 Download gff for FI22539.complete
Subject Subject Range Query Range Percent Splice Strand
CG13810-RA 1..1458 69..1526 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:26:22 Download gff for FI22539.complete
Subject Subject Range Query Range Percent Splice Strand
CG13810-RB 1..1552 2..1553 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:59 Download gff for FI22539.complete
Subject Subject Range Query Range Percent Splice Strand
CG13810-RB 1..1552 2..1553 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:18:48 Download gff for FI22539.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2185929..2186054 1..126 99 -> Plus
3L 2186123..2186368 127..372 100 -> Plus
3L 2186496..2187676 373..1553 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:18:48 Download gff for FI22539.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2185929..2186054 1..126 99 -> Plus
3L 2186123..2186368 127..372 100 -> Plus
3L 2186496..2187676 373..1553 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:18:48 Download gff for FI22539.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2185929..2186054 1..126 99 -> Plus
3L 2186123..2186368 127..372 100 -> Plus
3L 2186496..2187676 373..1553 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:26:22 Download gff for FI22539.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2186123..2186368 127..372 100 -> Plus
arm_3L 2185929..2186054 1..126 99 -> Plus
arm_3L 2186496..2187676 373..1553 100   Plus

FI22539.pep Sequence

Translation from 53 to 1525

> FI22539.pep
MRLPSMVDNVWKRFMAMLSLPDLLVLGCLWASGFSLGYYAKSAYVYDNLW
PHWYALVGGLVALALTLGWTLRKHKKQQYSYDHYYIIFYGLLCSLMGSCF
MLTRQLAVSYYFSFVGLSVQYLAGFSYVSLRCDASGSRPSRIALANSLYA
GGMATGFVIFNEMEPQRSGLIALGINLLLLCLVCLNELLHHTGCINYKES
RDLVFNLLNEEKMVFLPRQAILAQFVDRTDYELKESRQWLVLILGGSLVC
LQKSCLLFSPTYMQLTWSSTVGYLQQTQLYIPFVLYSAGTSFGALLLMRY
TPKLVYLLFGLIQITSIVALLCIYSDEQSEHCFLFLCLIYITMGVLSSQG
IHWLLECSPFLHTELALAAGFILQLCVMEGSKYESYATDTWIALIIVSVI
TQGLTALAIPVVQWLQPHSASLVDVRNRLLGIRRKSLPPEQTQFWHTNHF
LAHNKPANQLESVQLGRSRVFQQYPISGSDTAENHKGDKF*

FI22539.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24853-PA 490 GF24853-PA 1..490 1..490 2053 83.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14842-PA 490 GG14842-PA 1..490 1..490 2413 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14996-PA 483 GH14996-PA 1..483 6..490 1717 68.5 Plus
Dgri\GH11752-PA 269 GH11752-PA 1..269 220..490 863 64.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13810-PB 490 CG13810-PB 1..490 1..490 2569 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13158-PA 472 GI13158-PA 1..472 17..490 1609 67.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24637-PA 477 GL24637-PA 1..474 1..486 1202 53.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12546-PA 490 GA12546-PA 1..490 1..490 1974 76.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14466-PA 425 GM14466-PA 1..217 1..217 1135 97.7 Plus
Dsec\GM14466-PA 425 GM14466-PA 210..425 275..490 1095 95.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13664-PA 490 GD13664-PA 1..490 1..490 2548 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11933-PA 472 GJ11933-PA 1..472 17..490 1658 70.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12599-PA 496 GK12599-PA 10..484 9..483 1774 72 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21206-PA 485 GE21206-PA 1..485 6..490 2503 97.1 Plus

FI22539.hyp Sequence

Translation from 53 to 1525

> FI22539.hyp
MRLPSMVDNVWKRFMAMLSLPDLLVLGCLWASGFSLGYYAKSAYVYDNLW
PHWYALVGGLVALALTLGWTLRKHKKQQYSYDHYYIIFYGLLCSLMGSCF
MLTRQLAVSYYFSFVGLSVQYLAGFSYVSLRCDASGSRPSRIALANSLYA
GGMATGFVIFNEMEPQRSGLIALGINLLLLCLVCLNELLHHTGCINYKES
RDLVFNLLNEEKMVFLPRQAILAQFVDRTDYELKESRQWLVLILGGSLVC
LQKSCLLFSPTYMQLTWSSTVGYLQQTQLYIPFVLYSAGTSFGALLLMRY
TPKLVYLLFGLIQITSIVALLCIYSDEQSEHCFLFLCLIYITMGVLSSQG
IHWLLECSPFLHTELALAAGFILQLCVMEGSKYESYATDTWIALIIVSVI
TQGLTALAIPVVQWLQPHSASLVDVRNRLLGIRRKSLPPEQTQFWHTNHF
LAHNKPANQLESVQLGRSRVFQQYPISGSDTAENHKGDKF*

FI22539.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13810-PB 490 CG13810-PB 1..490 1..490 2569 100 Plus