Clone FI23944 Report

Search the DGRC for FI23944

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:239
Well:44
Vector:pFlc-1|pBS SK-
Associated Gene/TranscriptTsp42Eq-RA
Protein status:FI23944.pep: gold
Sequenced Size:1090

Clone Sequence Records

FI23944.complete Sequence

1090 bp assembled on 2013-08-22

GenBank Submission: BT150209.1

> FI23944.complete
AGTTGATTTCCGATAGCGAGTGCGAGTGTGGGCCAAACCGACATCAAGAC
ACCTGAAAATCCACCAAAATGAGCTGCGGCACGAAGGCATTGAAGGTGTC
CTCCTTCGTTTTGGACTTTCTGTGCTGTGTTCTGGCGGCACTGACCATCG
CGGCTTGCTCCTATGCCCTGATTGCTTTTAGCCACAGCGTAGCCATCCGG
GTGCCCAGCATCCTGGGCATCGTCCTGGGCGGCCTGCTGTTCTTCAGCAC
GATCTTCGGCTGCATTGCTGCCCTGCGGGAGAGTATTCGCATGACCTGGA
TCTATGCCGCAATACTGCTGGCCCTGGTTTTCAGTCAGATCACCGTCATC
TTGGCCCAACCCATCAACTATGAGCTGCTGGCCAACGAGACCATTTACGA
CGCCTGGCAGGGACAACTTTACCACTCGGACAGAATGTCCTACTTTGAGA
TCAAGTATCACTGCTGCGGACAGACGGGGCCCGCAAACTATCCGGATAGT
GGCCTGGTGATTCCGCAAAGCTGCTACTTCAACCAGAACGCCACGGTGAC
TACGGATCTCTATACGGTTGGGTGTAACCATCAGTTGGCAGCGGCCTTCG
TCAAGGGAACTCGCTGGGAGAAGATCACGGATTGGTCCGTTGTGGGTGTG
GAGATACTCACTGTCATCATCGCCGGACTCCTGGCTATAACCTTACAGAA
TGCCGAGCGCCGCCGTCTTTACCGATAAAAGCTGGCCTTAAGTTTCTACC
AAAAGTATTAGAACTGTACGAATGTGAAAGTGTTCCTAATTATATGAGGG
AGTAGTTGCCAAAACATGAATACATTAAATTGGTAACGTTAATATATTTC
AACCGTATTTAAATTGCTCAATACAAAATTTCAGAATGTATGCAAGCACT
TTTATAAAATTAGTCACACTTAAACCGATTCGTGGTACATTTGGAATGTT
GTGTCGCTTTCGACGTCTGGGTCTAAGCTGTTTTTATGTGCAATACTATG
TATAAGAAAAGTATGATTATATATTTAACAAGTCTATGAAGCTTATTAAG
AAAATAAACAATTTAATGCTTAATAAAAAAAAAAAAAAAA

FI23944.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2949514..2949934 1072..652 2105 100 Minus
chr2R 21145070 chr2R 2949988..2950187 653..454 1000 100 Minus
chr2R 21145070 chr2R 2950599..2950772 302..129 855 99.4 Minus
chr2R 21145070 chr2R 2950369..2950521 455..303 765 100 Minus
chr2R 21145070 chr2R 2950841..2950970 130..1 635 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7062110..7062530 1072..652 2105 100 Minus
2R 25286936 2R 7062584..7062783 653..454 1000 100 Minus
2R 25286936 2R 7063195..7063368 302..129 870 100 Minus
2R 25286936 2R 7062965..7063117 455..303 765 100 Minus
2R 25286936 2R 7063437..7063566 130..1 650 100 Minus
Blast to na_te.dros performed 2019-03-17 00:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 3078..3109 900..869 115 84.4 Minus

FI23944.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:17:16 Download gff for FI23944.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2949512..2949932 654..1074 99 <- Minus
chr2R 2949988..2950185 456..653 100 <- Minus
chr2R 2950369..2950521 303..455 100 <- Minus
chr2R 2950599..2950772 129..302 99 <- Minus
chr2R 2950843..2950970 1..128 99   Minus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-22 16:42:18 Download gff for FI23944.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eq-RA 1..660 69..728 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:18:39 Download gff for FI23944.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eq-RA 1..660 69..728 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 16:42:18 Download gff for FI23944.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eq-RA 4..1077 1..1074 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:39 Download gff for FI23944.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eq-RA 4..1077 1..1074 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:17:16 Download gff for FI23944.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7062584..7062781 456..653 100 <- Minus
2R 7062965..7063117 303..455 100 <- Minus
2R 7063195..7063368 129..302 100 <- Minus
2R 7063439..7063566 1..128 100   Minus
2R 7062108..7062528 654..1074 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:17:16 Download gff for FI23944.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7062584..7062781 456..653 100 <- Minus
2R 7062965..7063117 303..455 100 <- Minus
2R 7063195..7063368 129..302 100 <- Minus
2R 7063439..7063566 1..128 100   Minus
2R 7062108..7062528 654..1074 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:17:16 Download gff for FI23944.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7062584..7062781 456..653 100 <- Minus
2R 7062965..7063117 303..455 100 <- Minus
2R 7063195..7063368 129..302 100 <- Minus
2R 7063439..7063566 1..128 100   Minus
2R 7062108..7062528 654..1074 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 16:42:18 Download gff for FI23944.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2949613..2950033 654..1074 99 <- Minus
arm_2R 2950089..2950286 456..653 100 <- Minus
arm_2R 2950470..2950622 303..455 100 <- Minus
arm_2R 2950700..2950873 129..302 100 <- Minus
arm_2R 2950944..2951071 1..128 100   Minus

FI23944.hyp Sequence

Translation from 68 to 727

> FI23944.hyp
MSCGTKALKVSSFVLDFLCCVLAALTIAACSYALIAFSHSVAIRVPSILG
IVLGGLLFFSTIFGCIAALRESIRMTWIYAAILLALVFSQITVILAQPIN
YELLANETIYDAWQGQLYHSDRMSYFEIKYHCCGQTGPANYPDSGLVIPQ
SCYFNQNATVTTDLYTVGCNHQLAAAFVKGTRWEKITDWSVVGVEILTVI
IAGLLAITLQNAERRRLYR*

FI23944.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Eq-PA 219 CG12832-PA 1..219 1..219 1133 100 Plus
Tsp42El-PA 217 CG12840-PA 1..217 1..218 245 27.5 Plus
Tsp42Er-PA 211 CG12837-PA 8..211 8..218 244 28.2 Plus
Tsp42En-PB 218 CG12839-PB 1..218 1..218 225 29.2 Plus
Tsp42En-PA 218 CG12839-PA 1..218 1..218 225 29.2 Plus

FI23944.pep Sequence

Translation from 68 to 727

> FI23944.pep
MSCGTKALKVSSFVLDFLCCVLAALTIAACSYALIAFSHSVAIRVPSILG
IVLGGLLFFSTIFGCIAALRESIRMTWIYAAILLALVFSQITVILAQPIN
YELLANETIYDAWQGQLYHSDRMSYFEIKYHCCGQTGPANYPDSGLVIPQ
SCYFNQNATVTTDLYTVGCNHQLAAAFVKGTRWEKITDWSVVGVEILTVI
IAGLLAITLQNAERRRLYR*

FI23944.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12251-PA 219 GF12251-PA 1..219 1..219 1005 85.4 Plus
Dana\GF12689-PA 217 GF12689-PA 1..217 1..218 230 29 Plus
Dana\GF13154-PA 226 GF13154-PA 1..226 1..218 218 25.6 Plus
Dana\GF12682-PA 227 GF12682-PA 1..227 1..218 203 28.4 Plus
Dana\GF12688-PA 215 GF12688-PA 1..215 1..218 195 27.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10774-PA 219 GG10774-PA 1..219 1..219 1077 93.2 Plus
Dere\GG23255-PA 211 GG23255-PA 12..211 12..218 236 28.7 Plus
Dere\GG23251-PA 217 GG23251-PA 1..217 1..218 219 27.5 Plus
Dere\GG23254-PA 219 GG23254-PA 8..219 8..218 192 26.4 Plus
Dere\GG23252-PA 208 GG23252-PA 1..205 1..215 191 28.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23653-PA 219 GH23653-PA 1..219 1..219 876 73.1 Plus
Dgri\GH20385-PA 219 GH20385-PA 1..219 1..219 875 73.1 Plus
Dgri\GH21512-PA 218 GH21512-PA 1..218 1..218 283 31.3 Plus
Dgri\GH21509-PA 218 GH21509-PA 1..218 1..218 251 28.8 Plus
Dgri\GH21494-PA 226 GH21494-PA 1..226 1..218 213 25.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Eq-PA 219 CG12832-PA 1..219 1..219 1133 100 Plus
Tsp42El-PA 217 CG12840-PA 1..217 1..218 245 27.5 Plus
Tsp42Er-PA 211 CG12837-PA 8..211 8..218 244 28.2 Plus
Tsp42En-PB 218 CG12839-PB 1..218 1..218 225 29.2 Plus
Tsp42En-PA 218 CG12839-PA 1..218 1..218 225 29.2 Plus
Tsp42Eo-PA 219 CG12838-PA 8..219 8..218 224 26.4 Plus
Tsp42Ee-PB 228 CG10106-PB 1..228 1..218 219 26.1 Plus
Tsp42Ee-PA 228 CG10106-PA 1..228 1..218 219 26.1 Plus
Tsp42Ea-PC 226 CG18817-PC 1..226 1..218 215 24.7 Plus
Tsp42Ea-PB 226 CG18817-PB 1..226 1..218 215 24.7 Plus
Tsp42Ea-PA 226 CG18817-PA 1..226 1..218 215 24.7 Plus
lbm-PB 208 CG2374-PB 1..205 1..215 198 27.8 Plus
lbm-PA 208 CG2374-PA 1..205 1..215 198 27.8 Plus
Tsp42Ef-PA 220 CG12845-PA 4..220 5..218 178 21.2 Plus
Tsp42Ek-PB 215 CG12841-PB 1..215 1..218 173 26.6 Plus
Tsp42Ek-PA 215 CG12841-PA 1..215 1..218 173 26.6 Plus
Tsp42Eg-PA 218 CG12142-PA 1..215 1..218 156 22.1 Plus
Tsp42Ed-PB 227 CG12846-PB 1..227 1..218 153 22.6 Plus
Tsp42Ed-PA 227 CG12846-PA 1..227 1..218 153 22.6 Plus
Tsp42Ec-PA 232 CG12847-PA 21..229 14..215 153 27 Plus
Tsp42Ep-PB 250 CG4471-PB 48..219 48..216 148 24.4 Plus
Tsp42Ep-PA 250 CG4471-PA 48..219 48..216 148 24.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20057-PA 219 GI20057-PA 1..219 1..219 881 74 Plus
Dmoj\GI19481-PA 220 GI19481-PA 1..220 1..218 304 32.3 Plus
Dmoj\GI19464-PA 226 GI19464-PA 1..226 1..218 219 28.6 Plus
Dmoj\GI19479-PA 218 GI19479-PA 27..218 27..218 215 28 Plus
Dmoj\GI19477-PA 208 GI19477-PA 1..205 1..215 208 29.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10954-PA 213 GL10954-PA 1..213 1..219 918 80.4 Plus
Dper\GL11150-PA 210 GL11150-PA 17..204 34..215 264 31.9 Plus
Dper\GL11146-PA 217 GL11146-PA 1..217 1..218 236 28.4 Plus
Dper\GL11147-PA 208 GL11147-PA 1..205 1..215 212 28.7 Plus
Dper\GL11133-PA 226 GL11133-PA 1..226 1..218 211 25.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11839-PA 219 GA11839-PA 1..219 1..219 1014 85.8 Plus
Dpse\GA11846-PA 217 GA11846-PA 1..217 1..218 237 28.4 Plus
Dpse\GA24040-PA 223 GA24040-PA 1..193 1..196 234 29.8 Plus
Dpse\GA24625-PA 208 GA24625-PA 1..205 1..215 212 28.7 Plus
Dpse\GA15095-PA 226 GA15095-PA 1..226 1..218 211 25.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20823-PA 219 GM20823-PA 1..219 1..219 1127 97.3 Plus
Dsec\GM20924-PA 217 GM20924-PA 1..217 1..218 214 28.4 Plus
Dsec\GM20927-PA 219 GM20927-PA 8..219 8..218 199 26.4 Plus
Dsec\GM20926-PA 218 GM20926-PA 1..218 1..218 192 29.2 Plus
Dsec\GM20912-PA 226 GM20912-PA 1..226 1..218 192 27.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10276-PA 219 GD10276-PA 1..219 1..219 1120 96.8 Plus
Dsim\GD10455-PA 211 GD10455-PA 12..211 12..218 251 29.2 Plus
Dsim\GD10452-PA 217 GD10452-PA 1..217 1..218 197 28.4 Plus
Dsim\GD10441-PA 226 GD10441-PA 1..226 1..218 190 27.5 Plus
Dsim\GD10444-PA 228 GD10444-PA 1..228 1..218 189 27.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14948-PA 219 GJ14948-PA 1..219 1..219 894 75.3 Plus
Dvir\GJ15141-PA 220 GJ15141-PA 1..220 1..218 271 30.6 Plus
Dvir\GJ15137-PA 217 GJ15137-PA 1..217 1..218 224 30.2 Plus
Dvir\GJ15124-PA 226 GJ15124-PA 1..226 1..218 218 25.6 Plus
Dvir\GJ15139-PA 218 GJ15139-PA 1..218 1..218 211 27.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21531-PA 219 GK21531-PA 1..219 1..219 944 78.5 Plus
Dwil\GK21787-PA 215 GK21787-PA 1..215 1..218 284 33.6 Plus
Dwil\GK21783-PA 217 GK21783-PA 1..217 1..218 238 27.6 Plus
Dwil\GK21771-PA 226 GK21771-PA 1..226 1..218 214 27.9 Plus
Dwil\GK21786-PA 219 GK21786-PA 8..219 8..218 198 25.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24235-PA 219 GE24235-PA 1..219 1..219 1069 91.8 Plus
Dyak\GE19105-PA 211 GE19105-PA 12..211 12..218 240 28.2 Plus
Dyak\GE19104-PA 219 GE19104-PA 8..219 8..218 197 25.9 Plus
Dyak\GE19101-PA 217 GE19101-PA 1..217 1..218 193 27.5 Plus
Dyak\GE19090-PA 226 GE19090-PA 1..226 1..218 191 26.8 Plus