Clone FI24038 Report

Search the DGRC for FI24038

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:240
Well:38
Vector:pFlc-1
Associated Gene/TranscriptZip88E-RB
Protein status:FI24038.pep: gold
Sequenced Size:1533

Clone Sequence Records

FI24038.complete Sequence

1533 bp assembled on 2013-08-22

GenBank Submission: BT150206.1

> FI24038.complete
GTTTAAAAATAGTAAATGCAACGAACTTTTGTGTGTTTTACTGGCCCCCT
TCTTGATGACACAGTCTGGCAGTTGATACAATGAGCTTGCCAACCGACGG
TCTAAACATGGAGATCACCCCAAGCCCCACCCTGGCTGCCACGAGTCGCG
GCGACTTGGAAAAAGTGCTGGCTATGCTGGTCCTCGGACTCGGGAGTCTT
TTGTTCGGATTGCTGCCCGCCTTTATATCGGAACGGAATCGTCGCCGCTT
CCCGCTGACCGCATCCCTGCTCCTGTGCTTCGGAGCGGGCATTCTGCTAG
CCACCGCACTGGTGCACATTCTGCCCGAGGTGCGCGAACAAATGGACTCG
AAATTCGCTGAGGTTGCCATGTGCGGCGGGTTCTTCATCATCTACTTTAT
CGACGAGTTCATACACTACTTCTTTGGCGAGGCCATTCAGCACACTCATG
CCCACGATGCAGAGACTCCAGCAACCGAGCCACCAAGACGTCCCACTAAT
GACAATGGTTATGGCGCAGTGGACGAACGAGCGCCCCTTTTATCAGCGGA
ACCCAATACGTCACATGGGCATTCGCACCATCATAGCCACGATCATGACC
ACAATCACCCGGCCAGCGCATCTGGCTGTAATGATGCCAGTGTAGAGGAC
GCCAACGCCCGCATCTGCCACACCAGCCACACGGAACCCTGCGCCCAATC
CATGACAGGCACTCTGGGTCTCTTTGTCGCCCTGTCACTGCACTCGGCCA
TCGAAGGACTCGCCATCGGCGTTCAGAACTCTTCCACAAAGGTTCTGTTT
CTTCTAGGGGCCGTCGCCTGCCACAAGTTCGTGATGGGCTTTTGTCTGGG
GCTCGAGTTCCGCTCGAATCCGCAGACGAGTTTTCGCGCCCAGTTCGTCG
GCATTTCGGTGTTTGCCCTGGGCGCCGTCATTGGCATTGGCCTGGGCATG
CTTATCGTGGACGTGCCCGCCGCTTGGTCCAGCAAAACTCTGCCTATCGT
CCAAGCTCTGGCCGGAGGCACACTCTTCTACGTCACCGTCTGCGAGGTGA
TACCGCGCGAGAAGGCGCGCTGGCACTCGAACTCAACGCGACGCTGGGCG
GGATTTGCACAGTTTGCAACTGTGCTCGCCGGTTTTGCGACCATGTGCAT
CATAAACTTTTATCTTTCTGATGAGGATTAGACATCTTTTCGTTGAGAAA
TCGTTTCAGCGCTGTGAGAAAATGTGCCGCTTTTTAAACTTAGAACACTT
AGGATAATATTATGGATTGGCAGCTGTTAATCTCTTGTGTAAGACTTGTT
ACTTGTGCATTTCCAACTAATCTTGTTTTAGGTATATTGTCGATCTGCCG
TAGGATAAGTAAAAAGTTCAGTCTTCTCGTCTACATTTATATTTTCTCTT
TCTCCAAAGTTTGTGTTATTTTTTATGCTTTTATTATATGTAATAAACCT
TACAATTAAGTTGTTAATCAAAAAAAGGGCATCCTCTTTTCCTTTTGATT
AATCTTACTTAGCCAACCAAAAAAAAAAAAAAA

FI24038.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11094365..11094745 790..1170 1890 99.7 Plus
chr3R 27901430 chr3R 11094809..11095162 1165..1518 1740 99.4 Plus
chr3R 27901430 chr3R 11093313..11093643 1..331 1655 100 Plus
chr3R 27901430 chr3R 11093709..11093970 328..589 1310 100 Plus
chr3R 27901430 chr3R 11094034..11094237 590..793 1020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15269735..15270115 790..1170 1890 99.7 Plus
3R 32079331 3R 15270179..15270533 1165..1519 1745 99.4 Plus
3R 32079331 3R 15268683..15269013 1..331 1655 100 Plus
3R 32079331 3R 15269079..15269340 328..589 1310 100 Plus
3R 32079331 3R 15269404..15269607 590..793 1020 100 Plus
Blast to na_te.dros performed 2019-03-17 00:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 6572..6687 1466..1351 138 59.8 Minus

FI24038.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:17:17 Download gff for FI24038.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11093313..11093641 1..329 100 -> Plus
chr3R 11093711..11093970 330..589 100 -> Plus
chr3R 11094034..11094235 590..791 100 -> Plus
chr3R 11094367..11094745 792..1170 99 -> Plus
chr3R 11094815..11095162 1171..1518 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-22 16:42:21 Download gff for FI24038.complete
Subject Subject Range Query Range Percent Splice Strand
CG4334-RB 1..1101 81..1181 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:18:40 Download gff for FI24038.complete
Subject Subject Range Query Range Percent Splice Strand
Zip88E-RB 1..1101 81..1181 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 16:42:21 Download gff for FI24038.complete
Subject Subject Range Query Range Percent Splice Strand
CG4334-RB 22..1539 1..1518 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:40 Download gff for FI24038.complete
Subject Subject Range Query Range Percent Splice Strand
Zip88E-RB 22..1539 1..1518 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:17:17 Download gff for FI24038.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15268683..15269011 1..329 100 -> Plus
3R 15269081..15269340 330..589 100 -> Plus
3R 15269404..15269605 590..791 100 -> Plus
3R 15269737..15270115 792..1170 99 -> Plus
3R 15270185..15270532 1171..1518 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:17:17 Download gff for FI24038.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15268683..15269011 1..329 100 -> Plus
3R 15269081..15269340 330..589 100 -> Plus
3R 15269404..15269605 590..791 100 -> Plus
3R 15269737..15270115 792..1170 99 -> Plus
3R 15270185..15270532 1171..1518 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:17:17 Download gff for FI24038.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15268683..15269011 1..329 100 -> Plus
3R 15269081..15269340 330..589 100 -> Plus
3R 15269404..15269605 590..791 100 -> Plus
3R 15269737..15270115 792..1170 99 -> Plus
3R 15270185..15270532 1171..1518 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 16:42:21 Download gff for FI24038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11094405..11094733 1..329 100 -> Plus
arm_3R 11094803..11095062 330..589 100 -> Plus
arm_3R 11095126..11095327 590..791 100 -> Plus
arm_3R 11095459..11095837 792..1170 99 -> Plus
arm_3R 11095907..11096254 1171..1518 99   Plus

FI24038.hyp Sequence

Translation from 80 to 1180

> FI24038.hyp
MSLPTDGLNMEITPSPTLAATSRGDLEKVLAMLVLGLGSLLFGLLPAFIS
ERNRRRFPLTASLLLCFGAGILLATALVHILPEVREQMDSKFAEVAMCGG
FFIIYFIDEFIHYFFGEAIQHTHAHDAETPATEPPRRPTNDNGYGAVDER
APLLSAEPNTSHGHSHHHSHDHDHNHPASASGCNDASVEDANARICHTSH
TEPCAQSMTGTLGLFVALSLHSAIEGLAIGVQNSSTKVLFLLGAVACHKF
VMGFCLGLEFRSNPQTSFRAQFVGISVFALGAVIGIGLGMLIVDVPAAWS
SKTLPIVQALAGGTLFYVTVCEVIPREKARWHSNSTRRWAGFAQFATVLA
GFATMCIINFYLSDED*

FI24038.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:59:48
Subject Length Description Subject Range Query Range Score Percent Strand
Zip88E-PB 366 CG4334-PB 1..366 1..366 1916 100 Plus
Zip89B-PA 495 CG6898-PA 56..403 28..355 354 29.8 Plus
Zip42C.1-PA 352 CG9428-PA 24..342 28..365 287 27.9 Plus
Zip42C.2-PB 310 CG9430-PB 159..276 212..329 203 38.7 Plus

FI24038.pep Sequence

Translation from 80 to 1180

> FI24038.pep
MSLPTDGLNMEITPSPTLAATSRGDLEKVLAMLVLGLGSLLFGLLPAFIS
ERNRRRFPLTASLLLCFGAGILLATALVHILPEVREQMDSKFAEVAMCGG
FFIIYFIDEFIHYFFGEAIQHTHAHDAETPATEPPRRPTNDNGYGAVDER
APLLSAEPNTSHGHSHHHSHDHDHNHPASASGCNDASVEDANARICHTSH
TEPCAQSMTGTLGLFVALSLHSAIEGLAIGVQNSSTKVLFLLGAVACHKF
VMGFCLGLEFRSNPQTSFRAQFVGISVFALGAVIGIGLGMLIVDVPAAWS
SKTLPIVQALAGGTLFYVTVCEVIPREKARWHSNSTRRWAGFAQFATVLA
GFATMCIINFYLSDED*

FI24038.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11431-PA 354 GF11431-PA 1..354 1..365 1428 80.3 Plus
Dana\GF18487-PA 495 GF18487-PA 54..403 28..355 317 29.3 Plus
Dana\GF13796-PA 350 GF13796-PA 24..340 28..365 295 31.9 Plus
Dana\GF13795-PA 300 GF13795-PA 148..280 212..355 175 35.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16905-PA 366 GG16905-PA 1..366 1..366 1676 93.4 Plus
Dere\GG10806-PA 352 GG10806-PA 24..342 28..365 295 30.1 Plus
Dere\GG16992-PA 494 GG16992-PA 57..389 28..329 281 29.9 Plus
Dere\GG10805-PA 213 GG10805-PA 48..165 212..329 189 39.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18854-PA 359 GH18854-PA 10..359 20..365 1347 77.9 Plus
Dgri\GH19543-PA 494 GH19543-PA 66..404 28..329 276 30 Plus
Dgri\GH20143-PA 335 GH20143-PA 21..316 39..332 275 27.4 Plus
Dgri\GH20144-PA 362 GH20144-PA 30..352 28..365 264 28.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Zip88E-PB 366 CG4334-PB 1..366 1..366 1916 100 Plus
Zip89B-PA 495 CG6898-PA 56..403 28..355 354 29.8 Plus
Zip42C.1-PA 352 CG9428-PA 24..342 28..365 287 27.9 Plus
Zip42C.2-PB 310 CG9430-PB 159..276 212..329 203 38.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22925-PA 353 GI22925-PA 6..353 13..365 1367 78.4 Plus
Dmoj\GI22942-PA 494 GI22942-PA 68..399 28..329 308 28.9 Plus
Dmoj\GI16967-PA 287 GI16967-PA 1..254 10..260 240 30.1 Plus
Dmoj\GI20235-PA 343 GI20235-PA 41..285 51..332 239 26.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12539-PA 350 GL12539-PA 1..350 18..366 1478 81.8 Plus
Dper\GL21597-PA 504 GL21597-PA 58..394 26..329 310 29.2 Plus
Dper\GL10983-PA 365 GL10983-PA 75..355 64..365 255 28.2 Plus
Dper\GL10982-PA 314 GL10982-PA 149..295 198..355 195 33.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18116-PA 350 GA18116-PA 1..350 18..366 1478 81.8 Plus
Dpse\GA19939-PA 498 GA19939-PA 52..388 26..329 311 29.2 Plus
Dpse\GA21780-PA 365 GA21780-PA 75..355 64..365 255 28.2 Plus
Dpse\GA21782-PA 314 GA21782-PA 149..295 198..355 195 33.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24213-PA 357 GM24213-PA 1..357 10..366 1833 97.2 Plus
Dsec\GM11490-PA 77 GM11490-PA 1..77 290..366 417 100 Plus
Dsec\GM20857-PA 350 GM20857-PA 24..340 28..365 285 29.3 Plus
Dsec\GM15144-PA 494 GM15144-PA 55..387 28..329 273 30.5 Plus
Dsec\GM20856-PA 291 GM20856-PA 10..257 28..329 207 25.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19003-PA 774 GD19003-PA 1..363 1..363 1861 97 Plus
Dsim\GD24343-PA 352 GD24343-PA 24..342 28..365 292 29.3 Plus
Dsim\GD19087-PA 496 GD19087-PA 57..389 28..329 271 30.2 Plus
Dsim\GD15477-PA 310 GD15477-PA 10..276 28..329 252 27.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23208-PA 361 GJ23208-PA 21..361 23..365 1414 77.2 Plus
Dvir\GJ20186-PA 370 GJ20186-PA 30..360 28..365 283 30.1 Plus
Dvir\GJ23722-PA 501 GJ23722-PA 68..408 28..329 265 28.5 Plus
Dvir\GJ20185-PA 316 GJ20185-PA 129..276 185..332 211 34 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13793-PA 357 GK13793-PA 18..357 19..365 1275 70.9 Plus
Dwil\GK13772-PA 502 GK13772-PA 54..400 26..329 288 29.5 Plus
Dwil\GK22157-PA 351 GK22157-PA 54..341 64..365 257 27.2 Plus
Dwil\GK22156-PA 323 GK22156-PA 18..303 35..355 250 26.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24287-PA 366 GE24287-PA 1..366 1..366 1676 95.1 Plus
Dyak\GE24385-PA 496 GE24385-PA 55..387 28..329 278 30 Plus
Dyak\GE24543-PA 301 GE24543-PA 10..282 28..355 236 25.4 Plus
Dyak\GE24554-PA 352 GE24554-PA 24..333 28..355 235 26.5 Plus