Clone FI24544 Report

Search the DGRC for FI24544

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:245
Well:44
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptRpL22-like-RA
Protein status:FI24544.pep: gold
Sequenced Size:1169

Clone Sequence Records

FI24544.complete Sequence

1169 bp assembled on 2013-08-22

GenBank Submission: BT150208.1

> FI24544.complete
CTTCAACGGAGGAAGTCACGTGGTGTTTCTAAACCTATTTTTGATACTAA
TTTCTTTGGAGAATGAGTTCCCAGACGCAGAAAAAGAATGCTTCCAAGGC
CAAATCGAAGGCGGGCCCACAGCCGTCGAAGAAAGCCCCGGCTAAGGTGA
CTCCTGTAGAAACCGCCACCCCATCTGCGGCTCCGCCTTTGTCCTCTAAA
AAGGTGGCCAAAGCTCCGGCCGTGGCACTAAAGAATCTCGATTTGGCCAT
GAAAGAATCGGCTAAGAAGGCCGCCGAAGCTGCTGACCAAAAGTTGGTCT
CGAAGGCGAAGAAAGGGCAGAATGCTTCACGCAAGAACTTGATGCAAGTG
CCGGAACCCGTTGCCCCTGAAGTGGACAATAAGAAAAAGTCAGCGCCTCC
TAAACGTGGCAATGCGGAAATACCCACGGTTGTACCCGCCAAAAAGGCGG
CCCTGGTGCAAGAAAAGCCCAAGGAACAAGCTGCCGCAGCACCAAAAGCC
GAAAATGTCGAGGTTCCAGCAGCCAAAGCTAAAAGTGTAAAAAAGAGCCT
CGCCACTCCGGCAAATCCGAAGCCCAAGCCGAAACGCACGAAGAATGTTC
TGCGTGGAAAAAGGCTGGCCAAAAAGAAGGCTTGGCAACGCTTTGTGATC
GACTGCGCATGCGTGGCCGAGGATATGATCCTGGACCTCGCCGACTTCGA
GCAGTATTTGAAGACCCACATCAAGATAAAGAACAAGCTCAACCAGCTGA
AGGATCAGGTCACTTTCGAGCGCACCAAGAACTTCTCGCTGATCATCCAC
TCCGGTGTGCACTTCTCCAAGCGCTACTTCAAGTATCTGACCAAACGGTA
TTTGAAGAAGGTCAGCCTGCGCGATTGGTTGCGTGTAGTGTCCACGGCCA
AGGACACCTTCGCCATGACCTACTTCAAGATTCAGGACAAGGACTTTGAT
GACGACGACGACGACGTCGCCGACGACAATGGCGGAAAAACCTTTGCCTA
AAACAAAGATCGCATTTCGAAAACATGTATATCCCATGAAAGCTGTTCAA
GTGTGTAGACTTCTTAAATTTCTCAGTATACTTCACTAGTTCTCAATGTG
GCCCATACAATTTTTGCTCATTTGCTTCAACATATTTAACGATGAAATAT
CAAAAAAAAAAAAAAAAAA

FI24544.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19133091..19134114 1084..61 5015 99.3 Minus
chr2R 21145070 chr2R 19132999..19133068 1151..1082 320 97.1 Minus
chr2R 21145070 chr2R 19134166..19134226 61..1 305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23246702..23247725 1084..61 4970 99 Minus
2R 25286936 2R 23246593..23246679 1168..1082 390 96.6 Minus
2R 25286936 2R 23247777..23247837 61..1 305 100 Minus
Blast to na_te.dros performed on 2019-03-17 00:16:40 has no hits.

FI24544.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:17:19 Download gff for FI24544.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19132999..19133069 1082..1151 95 <- Minus
chr2R 19133094..19134114 61..1081 99 <- Minus
chr2R 19134167..19134226 1..60 100   Minus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-22 16:42:25 Download gff for FI24544.complete
Subject Subject Range Query Range Percent Splice Strand
RpL22-like-RA 1..939 63..1001 98   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:18:43 Download gff for FI24544.complete
Subject Subject Range Query Range Percent Splice Strand
RpL22-like-RA 1..939 63..1001 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 16:42:25 Download gff for FI24544.complete
Subject Subject Range Query Range Percent Splice Strand
RpL22-like-RA 57..1136 1..1080 99 -- Plus
RpL22-like-RA 1162..1232 1081..1151 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:43 Download gff for FI24544.complete
Subject Subject Range Query Range Percent Splice Strand
RpL22-like-RA 57..1136 1..1080 99 -- Plus
RpL22-like-RA 1162..1232 1081..1151 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:17:19 Download gff for FI24544.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23247778..23247837 1..60 100   Minus
2R 23246610..23246680 1082..1151 95 <- Minus
2R 23246705..23247725 61..1081 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:17:19 Download gff for FI24544.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23247778..23247837 1..60 100   Minus
2R 23246610..23246680 1082..1151 95 <- Minus
2R 23246705..23247725 61..1081 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:17:19 Download gff for FI24544.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23247778..23247837 1..60 100   Minus
2R 23246610..23246680 1082..1151 95 <- Minus
2R 23246705..23247725 61..1081 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 16:42:25 Download gff for FI24544.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19134133..19134203 1082..1151 95 <- Minus
arm_2R 19134228..19135248 61..1081 99 <- Minus
arm_2R 19135301..19135360 1..60 100   Minus

FI24544.hyp Sequence

Translation from 62 to 1000

> FI24544.hyp
MSSQTQKKNASKAKSKAGPQPSKKAPAKVTPVETATPSAAPPLSSKKVAK
APAVALKNLDLAMKESAKKAAEAADQKLVSKAKKGQNASRKNLMQVPEPV
APEVDNKKKSAPPKRGNAEIPTVVPAKKAALVQEKPKEQAAAAPKAENVE
VPAAKAKSVKKSLATPANPKPKPKRTKNVLRGKRLAKKKAWQRFVIDCAC
VAEDMILDLADFEQYLKTHIKIKNKLNQLKDQVTFERTKNFSLIIHSGVH
FSKRYFKYLTKRYLKKVSLRDWLRVVSTAKDTFAMTYFKIQDKDFDDDDD
DVADDNGGKTFA*

FI24544.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
RpL22-like-PA 312 CG9871-PA 1..312 1..312 1578 100 Plus
RpL22-PA 299 CG7434-PA 4..297 5..299 480 42.9 Plus

FI24544.pep Sequence

Translation from 62 to 1000

> FI24544.pep
MSSQTQKKNASKAKSKAGPQPSKKAPAKVTPVETATPSAAPPLSSKKVAK
APAVALKNLDLAMKESAKKAAEAADQKLVSKAKKGQNASRKNLMQVPEPV
APEVDNKKKSAPPKRGNAEIPTVVPAKKAALVQEKPKEQAAAAPKAENVE
VPAAKAKSVKKSLATPANPKPKPKRTKNVLRGKRLAKKKAWQRFVIDCAC
VAEDMILDLADFEQYLKTHIKIKNKLNQLKDQVTFERTKNFSLIIHSGVH
FSKRYFKYLTKRYLKKVSLRDWLRVVSTAKDTFAMTYFKIQDKDFDDDDD
DVADDNGGKTFA*

FI24544.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13308-PA 290 GF13308-PA 1..278 1..293 587 49.8 Plus
Dana\GF22220-PA 298 GF22220-PA 175..296 177..299 299 56.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20055-PA 302 GG20055-PA 1..301 1..311 1107 74.7 Plus
Dere\GG12744-PA 300 GG12744-PA 177..298 177..299 310 57.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12600-PA 310 GH12600-PA 203..308 193..299 274 57 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
RpL22-like-PA 312 CG9871-PA 1..312 1..312 1578 100 Plus
RpL22-PA 299 CG7434-PA 4..297 5..299 480 42.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15434-PA 300 GI15434-PA 167..298 165..299 302 54.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13062-PA 305 GL13062-PA 182..303 177..299 374 57.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20348-PA 305 GA20348-PA 182..303 177..299 374 57.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15570-PA 312 GM15570-PA 1..312 1..312 1210 86.5 Plus
Dsec\GM19023-PA 298 GM19023-PA 175..296 177..299 311 57.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25071-PA 311 GD25071-PA 1..293 1..293 1182 88.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14723-PA 299 GJ14723-PA 163..297 166..299 310 54.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10059-PA 304 GK10059-PA 181..302 177..299 291 56.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11592-PA 306 GE11592-PA 1..305 1..311 965 69.5 Plus
Dyak\GE16569-PA 300 GE16569-PA 178..298 178..299 305 57.4 Plus