FMO01001.5prime Sequence
1195 bp (997 high quality bases) assembled on 2008-02-20
> FMO01001.5prime
TTAAAACGAAGTTATCAGTCGACATGGCCGGAGCAACACTTTTCGAGCGT
GCCCAGGCATTGTCCAGCGTGAATCGCGAGGAGCAGGATAGTTCGCTGCT
GAACAAACTGGTCCGCGACCAGGAGGGCGCCGAGAACGATGAGGAGCGCA
TCCGAATCAAGGAGCAGGGCATTCTGCAGCAGGGCGAGCTCTACAAGCAG
GAGGGCAAGGCCAAGGAGCTGGCCGATCTCATCAAGGTGACGCGTCCGTT
CCTCAGCTCGATCAGCAAGGCCAAGGCGGCCAAGCTGGTGCGTTCGCTGG
TGGACATGTTCCTGGACATGGACGCGGGCACAGGCATTGAGGTTCAATTG
TGTAAAGACTGCATTGAGTGGGCCAAACAGGAGAAGCGCACATTTCTTCG
CCAATCGCTGGAAGCTCGTCTGATTGCCTTATATTTTGATACTGCTTTGT
ACACGGAGGCCTTGGCTCTGGGTGCCCAATTGCTGCGCGAGCTGAAAAAG
CTGGATGACAAGAATCTGCTGGTGGAAGTGCAGCTGCTGGAGAGCAAAAC
CTATCACGCACTGAGCAACCTGCCCAAGGCTAGGGCCGCCCTCACCTCAG
CCCGCACCACGGCCAATGCTATCTACTGTCCGCCAAAGGTGCAAGGCGCA
CTGGATCTTCAGTCCGGCATCCTACATGCGGCTGATGAGCGTGACTTTAA
GACCGCATTCTCCTATTTCTACGAGGCCTTTGAAGGATTCGACAGCGTGG
ACAGCGTCAAGGCCTTGACCTCGCTTAAATACATGTTGCTGTGCAAAATC
ATGTTGGGACAGTCCGATGATGTCAACCAGCTCGTCAGTGGAAAGCTGGC
TATTACCTATTCGGGCCGCGATATAGATGCTATGAATCAGTGGCTGAGCT
TCACACAAACGTTCCCTGACGACTTCCAGGCTGCCCTCAAGGAATACAAA
AGGAGCTCGCGAGGATGTGATGTGCAGCGCATTTGGGCACGTATACGACA
CCATGATGAGCAACTGTGCGCATCATGACCTACTCTCGTGTGCAGTCGCA
TGTGCTGAAGCATCACTGCCATGCCAGTGAAAGACTGTTCCAATGATTCT
GACAAGGTTCACCGCATTTCGATCGGTGAGGAATCGATGTTCAGAGTCCC
GGTCAGACCTGGACCGCGTCCTGAACCTATCGAAGGATTGGTTAT
FMO01001.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn6-RC | 1662 | CG10149-RC | 74..1111 | 24..1045 | 4780 | 98.3 | Plus |
| Rpn6-RB | 1827 | CG10149-RB | 239..1276 | 24..1045 | 4780 | 98.3 | Plus |
| Rpn6-RA | 1612 | CG10149-RA | 126..1163 | 24..1045 | 4780 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14751144..14751653 | 849..340 | 2550 | 100 | Minus |
| 2R | 25286936 | 2R | 14751714..14752033 | 343..24 | 1600 | 100 | Minus |
| 2R | 25286936 | 2R | 14750831..14750996 | 1005..848 | 415 | 94.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:26:43 has no hits.
FMO01001.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:39:58 Download gff for
FMO01001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10149-RB | 272..1340 | 12..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:51 Download gff for
FMO01001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn6-RA | 119..1180 | 15..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:55 Download gff for
FMO01001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn6-RA | 119..1180 | 15..1058 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:55 Download gff for
FMO01001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14750783..14750995 | 849..1045 | 91 | <- | Minus |
| 2R | 14751145..14751651 | 342..848 | 100 | <- | Minus |
| 2R | 14751716..14752047 | 12..341 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:51 Download gff for
FMO01001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10638288..10638500 | 849..1045 | 91 | <- | Minus |
| arm_2R | 10638650..10639156 | 342..848 | 100 | <- | Minus |
| arm_2R | 10639221..10639552 | 12..341 | 98 | | Minus |
