FMO01007.5prime Sequence
525 bp (525 high quality bases) assembled on 2008-03-07
> FMO01007.5prime
ATAACAAAGTTATCAGTCGACATGCCCAGCATCAAGTTGCAATCTTCGGA
TGAGGAGATCTTTGACACGGATATCCAGATCGCCAAGTGCTCCGGCACTA
TCAAGACCATGCTGGAGGACTGCGGCATGGAGGACGATGAGAATGCCATT
GTGCCGTTGCCCAATGTGAATTCGACGATTCTTCGCAAGGTGCTTACCTG
GGCTCACTACCACAAGGACGACCCCCAGCCAACGGAGGATGATGAGAGCA
AGGAGAAGCGCACAGACGACATTATCTCATGGGATGCAGATTTCCTAAAA
GTCGACCAGGGCACACTGTTTGAGCTGATATTGGCAGCGAACTATCTGGA
CATTAAGGGCCTTCTGGAGCTCACCTGCAAGACTGTTGCAAACATGATTA
AGGGAAAGACTCCCGAGGAAATACGCAAGACCTTCAACATTTAGAAGGAC
TTTTCGCCCGCCGAGGAGGAGCAGGTGCGCAAGGAGAACGAGTGGTGCGA
GGAGAAGGCAAGCTTTCTAGACCAT
FMO01007.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpA-RI | 826 | CG16983-RI | 37..522 | 22..507 | 2415 | 99.8 | Plus |
| SkpA-RH | 1544 | CG16983-RH | 755..1240 | 22..507 | 2415 | 99.8 | Plus |
| SkpA-RA | 1087 | CG16983-RA | 298..783 | 22..507 | 2415 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 657110..657595 | 22..507 | 2415 | 99.8 | Plus |
| 2R | 25286936 | 2R | 12139446..12139797 | 503..152 | 440 | 75 | Minus |
| X | 23542271 | X | 19812810..19813228 | 25..440 | 260 | 71.4 | Plus |
| X | 23542271 | X | 19816453..19816565 | 328..440 | 250 | 81.4 | Plus |
| X | 23542271 | X | 19816147..19816292 | 25..170 | 235 | 77.4 | Plus |
| 2L | 23513712 | 2L | 17581473..17581534 | 25..86 | 220 | 90.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:57 has no hits.
FMO01007.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:38 Download gff for
FMO01007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16983-RF | 119..610 | 22..513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:31 Download gff for
FMO01007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpA-RD | 683..1174 | 22..513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:15 Download gff for
FMO01007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SkpA-RA | 298..789 | 22..513 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:15 Download gff for
FMO01007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 657110..657601 | 22..513 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:31 Download gff for
FMO01007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 551143..551634 | 22..513 | 99 | | Plus |
