FMO01008.5prime Sequence
1182 bp (734 high quality bases) assembled on 2008-03-07
> FMO01008.5prime
AAAAACAAAGTTATCAGTCGACATGTTGGATGACCTGCCGGATCAGTTTG
ACCTGGTCGTCATAGGCACAGGCTTCACCGAGTCCTGCATCGCCGCTGCA
GGCAGCAGGATAGGCAAATCGGTGCTCCACCTGGATAGTAATGAGTACTA
CGGGGATGTTTGGAGCTCCTTCTCTATGGATGCTCTATGTGCCCGCTTGG
ACCAGGAAGTCGAGCCTCATTCTGCATTGCGAAACGCAAGGTACACCTGG
CATTCCATGGAAAAAGAATCAGAAACAGATGCACAATCCTGGAATAGGGA
CTCAGTGCTGGCCAAGTCGCGACGCTTCAGCTTGGATCTATGCCCGCGCA
TTTTATACGCAGCCGGGGAGCTGGTGCAGTTGCTCATCAAGTCGAACATC
TGCCGCTATGCTGAATTCCGAGCCGTGGACCATGTGTGCATGCGCCACAA
TGGTGAAATTGTGTCCGTGCCCTGCTCCCGTAGCGATGTCTTCAACACCA
AAACACTGACCATCGTGGAAAAGCGCTTGCTGATGAAATTTCTCACCGCC
TGCAACGATTACGGCGAGGACAAGTGCAACGAGGACTCGTTGGAATTCCT
GGGGACGAACGTTTCTGTAATATTTGCAGGCGCAGCGGGTGACCGAAAAG
ATATCGTCGTGCGTGATGCAGGCCATTGCCATGTGCGGGCCCCAGCACCA
GCTTCGAGGAGGGTATGCAGCGCACACAACGATTTGCTGGGCAGTCTGGG
CCGCTATGTCAACTCACCCTTTCTCTTTCTCATGTATGGCTGCGGGGAAT
TGCCCGCAGTGCTTCTGCCGTTTGTGCGCTGTTTATTGTTGCATTTACTG
CCTAAAGCGAGCCGTTGACGACATTGCCTTATATCCAATTCGAATGAGTT
CCTGCTGAGCAGCGCATGGAATAACTTTGGCAGGCCAAGAAATGGGGTCT
CTGCCCCTGGCTATACCACCAGTTCAAAGGCAATAGAGTTGAGCCGCCCA
TCACACGTGGCCTTGTTCTATCGTTCAAGTCCTGTCCATGATGAGCTGAC
ATGGAAGTGGTGGTGTTAATCTTCTTCACAACTGACATGAAAGGTGACCG
GAAGCCTTTCTAAATACACCGGTCCCATTACCGTAACCTGTCCGAGGCTA
TATATCTTCCTTGGATCCCCCTCGAGTTTGAG
FMO01008.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rep-RA | 1923 | CG8432-RA | 136..1281 | 21..1160 | 4535 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19492329..19493266 | 69..1011 | 3945 | 96.7 | Plus |
| 2R | 25286936 | 2R | 19492222..19492273 | 21..72 | 245 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:15:21 has no hits.
FMO01008.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:39 Download gff for
FMO01008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8432-RA | 132..1071 | 21..966 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:44 Download gff for
FMO01008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rep-RA | 136..1075 | 21..966 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:22 Download gff for
FMO01008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rep-RA | 136..1075 | 21..966 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:22 Download gff for
FMO01008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19492332..19493220 | 72..966 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:44 Download gff for
FMO01008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15379837..15380725 | 72..966 | 97 | == | Plus |
