Clone FMO01009 Report

Search the DGRC for FMO01009

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:10
Well:9
Vector:pMK33-CFH-BD
Associated Gene/TranscriptClc-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01009.5prime Sequence

683 bp (683 high quality bases) assembled on 2008-02-20

> FMO01009.5prime
CAGTCGACATGGACTTCGGAGACGATTTCGCTGCCAAGGAGGACGTGGAT
CCGGCGGCCGAGTTCCTGGCGCGCGAACAGTCAGCTCTCGGGGACTTGGA
GGCGGAGATTACGGGTGGATCTGCATCAGCTCCTCCGGCTGCATCCACAG
ACGAGGGCTTGGGTGAGCTTCTGGGAGGCACCGCCTCCGAAGGCGATTTG
CTCTCTGCTGGCGGCACGGGTGGCCTCGAATCCTCCACTGGCAGTTTTGA
GGTCATTGGTGGCGAGTCCAATGAACCCGTGGGCATATCCGGTCCGCCGC
CGTCGCGGGAAGAGCCCGAAAAGATACGCAAATGGCGCGAAGAGCAAAAG
CAACGACTGGAGGAGAAGGACATCGAGGAGGAGCGAAAAAAGGAGGAACT
CCGACAGCAGTCCAAGAAGGAGCTGGTCGACTGGTTGCGCCAGATTGGCG
AGTCCATATCGAAGACCAAACTGGCGTCGCGGAATGCCGAGAAACAAGCC
GCCACCCTGGAGAATGGCACCATCGAGCCGGGCACCGAATGGGAGCGCAT
AGCCAAGCTCTGCGACTTCAATCCCAAGGTGAACAAGGCGGGAAAGGACG
TCTCCCGCATGCGATCCATCTACCTGCACCTCAAGCAGAATCTTCCCCAG
GTGCAGAAGAGCACCGCAAGCTTTCTAGACCAT

FMO01009.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
Clc-RD 1073 CG6948-RD 135..792 8..665 3200 99.1 Plus
Clc-RC 1230 CG6948-RC 292..949 8..665 3200 99.1 Plus
Clc-RB 1005 CG6948-RB 67..724 8..665 3200 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20242797..20243454 8..665 3200 99.1 Plus
Blast to na_te.dros performed on 2014-11-28 22:15:00 has no hits.

FMO01009.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:01 Download gff for FMO01009.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6948-RA 185..848 1..665 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:25 Download gff for FMO01009.5prime
Subject Subject Range Query Range Percent Splice Strand
Clc-RB 61..724 1..665 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:12 Download gff for FMO01009.5prime
Subject Subject Range Query Range Percent Splice Strand
Clc-RB 61..724 1..665 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:12 Download gff for FMO01009.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20242791..20243454 1..665 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:25 Download gff for FMO01009.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20235891..20236554 1..665 98   Plus