FMO01010.5prime Sequence
650 bp (650 high quality bases) assembled on 2008-03-07
> FMO01010.5prime
AAAAAACAAAGTTATCAGTCGACATGAGTTCTCTAAAGCTCCACAAGAGG
CTCGCAGCCTCCGTGCTGCGATGCGGCAAGAAGAAGGTCTGGTTGGATCC
CAATGAAATCAACGAGATCGCTAACACAAACTCGCGTCAGAACATTCGCA
AGCTTATCAAGGATGGTCTGATCATCAAGAAGCCCGTCGTGGTCCACTCC
CGTTACCGTGTGCGCAAAAACACCGAGGCCCGCCGCAAGGGACGTCACTG
CGGATTCGGAAAGCGTAAGGGTACTGCGAACGCCCGCATGCCTACCAAGC
TGCTGTGGATGCAGCGCCAGCGCGTTCTGCGCCGCCTGTTGAAGAAGTAC
CGCGACAGCAAGAAGATTGACAGGCACCTGTACCACGACCTGTACATGAA
GTGCAAGGGTAACGTATTCAAGAACAAGCGCGTCCTCATGGAGTACATCC
ACAAGAAGAAGGCTGAGAAGCAGCGCAGCAAGATGCTGGCTGATCAGGCC
GAGGCTCGCCGACAGAAGGTGCGTGAGGCCCGCAAGCGCCGCGAGGAGCG
TATTGCCACCAAGAAGCAGGAGCTCATCGCCCTGCATGCTAAGGAGGACG
AGATCGCTGCCAAGGCCGCCACCGCGGGTCACGCAAGCTTTCTAGACCAT
FMO01010.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL19-RB | 755 | CG2746-RB | 36..645 | 23..632 | 3035 | 99.8 | Plus |
| RpL19-RA | 1361 | CG2746-RA | 74..683 | 23..632 | 3035 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24968555..24969051 | 632..136 | 2485 | 100 | Minus |
| 2R | 25286936 | 2R | 24969116..24969226 | 137..27 | 540 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:28:42 has no hits.
FMO01010.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:35 Download gff for
FMO01010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2746-RB | 25..650 | 15..642 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:25:17 Download gff for
FMO01010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 67..692 | 15..642 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:13:31 Download gff for
FMO01010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL19-RA | 67..692 | 15..642 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:13:31 Download gff for
FMO01010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24968546..24969051 | 136..642 | 99 | <- | Minus |
| 2R | 24969118..24969224 | 29..135 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:25:17 Download gff for
FMO01010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20856069..20856574 | 136..642 | 99 | <- | Minus |
| arm_2R | 20856641..20856747 | 29..135 | 99 | <- | Minus |
