FMO01011.5prime Sequence
1131 bp (391 high quality bases) assembled on 2008-02-20
> FMO01011.5prime
ATTAAACGAAGTTATCAGTCGACATGGCAACCGGCGTCATCCAGAGTAGC
GTTGTCTCCACCTCCGCCGGACGCCAGAATATCTGCGACTGCCTGGAACA
GGAGTCCGCCGGATTGGTCAAGGCCCTGCCCAAATCCAAGTCGGCCGATC
AGCTCTCGGAACTCACCTGCGCCTGCCTGCGCTGCCAGTACCTGGCCACG
GATCTTCAGCATCCGAACACCCAGTCCGGTCACCTGCCCGTGGAGCACAG
ACACCGACCCGTGAGCTCAGGCTCCGGTTCACTGGGCGCCCTCAGCGCCA
AGGAGTCGCCCATCTTCGTGCGCCGCCAGATCTGTTTCCCGTCCGCTTAG
ACCCAGCTGCATCCGCCGCTCATCTCCTCCCAGTTCTCGCTGCGAAGTGC
TTCTCCGGCCTACGCCGAGCCCCAAGCCGGAATTTGTATTCTCTTGCGGC
CATAAAGGCGCTGCAACTGACCCCGGGCCATGGCCCGCCGGAGTTCAACC
CGTAACCCCCTGGGACCTCCACCGGAACCAACGGATACCTGCTCTACGGA
ACCCTTCATGAACTCCACCAACGATAAACGCGAGCATCTGGACAAAATTC
TAATCCTTTGGTGGACTGGGCACCGGCCCGAACTTTCTTTTTTAAGCGCC
ATGGGCAACCATTCTTTCAACCCAAACTACCGGGGCCCCCCTTCGCGTGG
AACTTCCCCCTGGAAGTGCTTGCAATGGGGCCCCCATACGAAAGGGCGCC
CTCCCGCTGTGGGATATCGCCGGGCAAGGGAGGGGTGGCAACTGTGCCCC
TGTCCTCTTACAAGGGGGGGGGGGGCGCGGTTCTTCCGTTTTTGATGTGA
CTCTGCGTGGGGACTTTTCGATTGGCGTGGAGCAGTGGGAAGGAAGATCT
AGACCCCAAGGTGCAGCTGCCGGACGGCAGTCCATTCCGTTGCATCCTGC
TGGCCATTAATGCGACCAGGAAAGCAGCATCATACGCAACTCGATAGATG
ATGAGTATGTGAGGAGACGATGCGGTGGTTGAACATCCGCCAGAGAATAT
CACATTCATGAGGCACCTCGGCCTCTCGTGATAAGATCTCTCTCATCGAT
ACGTCGTGATATGCGCGATCTGGGCGGAGTG
FMO01011.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-RC | 2347 | CG8024-RC | 610..1668 | 23..1087 | 2925 | 87.9 | Plus |
| ltd-RE | 2156 | CG8024-RE | 419..1477 | 23..1087 | 2925 | 87.9 | Plus |
| ltd-RJ | 1342 | CG8024-RJ | 126..663 | 556..1087 | 845 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9185285..9185733 | 476..23 | 1960 | 96.5 | Minus |
| 2R | 25286936 | 2R | 9178831..9179221 | 960..556 | 345 | 79.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:17:13 has no hits.
FMO01011.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:39:54 Download gff for
FMO01011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8024-RC | 625..1073 | 18..472 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:26 Download gff for
FMO01011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 415..863 | 18..472 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:45 Download gff for
FMO01011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 415..863 | 18..472 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:45 Download gff for
FMO01011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9185289..9185737 | 18..472 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:26 Download gff for
FMO01011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5072794..5073242 | 18..472 | 96 | | Minus |
