FMO01012.5prime Sequence
1045 bp (929 high quality bases) assembled on 2008-02-20
> FMO01012.5prime
ATAAAACAAAGTTATCAGTCGACATGAGTTCCGCTGAGTACTACCCATTC
AAGTGCACACCCACTGTCTACCCGGCGGATCCCTTCGATCCCGTCGAGGA
TGCGGCTATTCTGCGCAAGGCGATGAAAGGCTTCGGCACCGACGAGAAGG
CCATCATCGAGATCCTGGCCAGGCGTGGCATCGTCCAGCGTTTGGAGATC
GCTGAGGCGTTCAAGACCTCGTACGGCAAGGACCTGATCTCGGACCTCAA
GTCCGAACTGGGCGGCAAATTCGAGGATGTTATCCTGGCTCTGATGACGC
CGCTGCCCCAGTTCTATGCCCAGGAGCTGCACGACGCCATCTCGGGACTG
GGAACCGACGAGGAGGCCATCATCGAGATCCTCTGCACGCTGTCCAACTA
CGGCATCAAGACCATTGCCCAGTTCTACGAGCAGAGCTTCGGCAAGTCCC
TAGAGTCCGACCTGAAGGGCGACACCAGTGGCCACTTCAAGCGGCTGTGT
GTCTCGCTCGTCCAGGGCAACCGGGATGAGAACCAGGGCGTGGACGAGGC
CGCGGCCATCGCCGATGCCCAGGCTCTGCACGACGCCGGTGAGGGACAGT
GGGGCACAGATGAGTCCACCTTCAACTCGATCCTGATCACCCGCTCCTAC
CAGCAGCTGCGCCAGATCTTCCTCGAATACGAGAATCTGTCGGGCAACGA
CATCGAGAAGGCCATCAAGCGGGAGTTTAGCGGCTCCGTGGAGAAGGGTT
TCCTGGCCATCGTCAAGTGCTGCAAGTCCAAGATCGACTACTTTTCGGAG
CGCCTGCACGACTCAATGGGCCGGCATGGGCACCAAGGACAAGACGCTGA
TCCGCATCATTGTCAGCCGGTCGGAGATCGATCTGGGTGACATCAGGGAT
GCATTCCAGAACAAGTACGGCAAGAGCTTGTGTCCTGATCAAGGACGACC
TTCTCCGGAGACTACAGCTACGTCTTGCAGTGCCTGGCCCTCTACGCAAG
GCTTTCTAGAACCATTCGGTTGGCGCCGCCGGGGGCCCAGGTAGT
FMO01012.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AnxB9-RB | 1184 | CG5730-RB | 70..1035 | 24..989 | 4680 | 99.2 | Plus |
| AnxB9-RD | 1300 | CG5730-RD | 186..1151 | 24..989 | 4680 | 99.2 | Plus |
| AnxB9-RF | 1457 | CG5730-RF | 95..1020 | 24..948 | 4485 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21068067..21068777 | 52..762 | 3540 | 99.9 | Plus |
| 3R | 32079331 | 3R | 21068837..21069004 | 762..930 | 765 | 98.2 | Plus |
| X | 23542271 | X | 16418705..16418779 | 398..324 | 225 | 86.7 | Minus |
| 3R | 32079331 | 3R | 21070731..21070768 | 952..989 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:23:03 has no hits.
FMO01012.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:39:56 Download gff for
FMO01012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5730-RD | 190..1179 | 16..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:54 Download gff for
FMO01012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB9-RD | 178..1167 | 16..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:38 Download gff for
FMO01012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB9-RD | 178..1167 | 16..1006 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:38 Download gff for
FMO01012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21067471..21067499 | 25..53 | 100 | -> | Plus |
| 3R | 21068069..21068777 | 54..762 | 99 | -> | Plus |
| 3R | 21068838..21069019 | 763..943 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:54 Download gff for
FMO01012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16893193..16893221 | 25..53 | 100 | -> | Plus |
| arm_3R | 16893791..16894499 | 54..762 | 99 | -> | Plus |
| arm_3R | 16894560..16894741 | 763..943 | 96 | -> | Plus |
