FMO01020.5prime Sequence
1248 bp (645 high quality bases) assembled on 2008-03-07
> FMO01020.5prime
AAAGCAAAGTTATCAGTCGACATGTCCTCGTCGTCGACGTCCGGCGGCCG
GAAGCAACCCACTGCTGTGTCGCGCATGAAGCAGGACTATATGCGCCTCA
AGCGGGATCCCCTGCCGTACATAACCGCCGAGCCGCTGCCCAACAACATC
CTCGAGTGGCACTACTGCGTCAAGGGGCCGGAGGACTCGCCCTACTACGG
CGGCTACTACCACGGCACCCTGCTCTTTCCGCGCGAGTTCCCATTCAAGC
CGCCATCCATCTACATGCTGACGCCGAACGGTCGCTTCAAGACCAACACC
AGACTGTGTTTGAGTATATCAGATTTTCATCCGGACACTTGGAACCCGAC
TTGGTGCGTAGGCACCATTCTCACTGGACTGCTGAGCTTCATGCTGGAGA
GCACACCCACACTCGGATCCATCGAATCATCGAATTATGACAAGCAAATG
TTTGCTCAAAAATCACTAGCATTTAACCTGCGCAACACCAACTTCTGTGA
GCTGTTTCCGGAGATAGTCGAAGAGATCAAGCAGCGGCTGCGAGGAACAC
AGGCGGCAGCTGCTGTGGACGGACCCGCTGCCAATGGAGTAAAGCGTTCC
ACGGGACTGGCCAACGGAGCGAGCCTGGCATCTGCGGATGGCAATCTGGC
GGTGGGCGGCTTGCCCAATCCACTGAATGCAGCGGACGCAATCGATGGCG
GGCGGCGGGTCAGGCGGATTTTGGCCAGCGGCCGCAGGAGCGGCGGTCCA
AATATTGCACGGAACTCCTATCTAAACTGGCAGTCCGTCTATTCAAACCT
GGGATCATTATCTGCTTTGCAATTGTTTGCCCTCATTGTTATTACGTGAT
CAAGAACCCTGAATCAGGACTCAAGCTTTCCTAGAATCATTTCGTTTGGC
GCGCGGGCCTTGTTAATTGTCTTAACATAATCATAATCATAATTCATAAT
CTCTACTTAGCCTAGGAGATCTCTGGTCATGACTAGTGTTTGAATTCCCA
CCAAAAAAAATCGCTCGTCGGCAACCTGACGTTCTGAACAGTCCAGATTG
TAATTCCTAAGGTCATTATTGATCATCAACGGAGTCAAGCGAGCTCGAAA
TTAAATTACCCCCCGTCCTGGTCCTCTCCTCTCCCGTCCTGTTTAATTCT
TAAACATTCCGGCCAACTGAGCCTTCAAGCCATAGAACCTGTATTCGCGG
CGCACCAACCTGGTCACCTGTGCATATATAATTTGTCCATGTGGGGAG
FMO01020.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-RB | 1789 | CG5823-RB | 542..1390 | 21..869 | 3975 | 98.4 | Plus |
| CG5823-RA | 1850 | CG5823-RA | 603..1451 | 21..869 | 3975 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17532724..17533200 | 869..393 | 1915 | 97.1 | Minus |
| 3R | 32079331 | 3R | 17533623..17533924 | 322..21 | 1510 | 100 | Minus |
| 3R | 32079331 | 3R | 17533260..17533334 | 393..319 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:48 has no hits.
FMO01020.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:45 Download gff for
FMO01020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 585..1439 | 14..869 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:46 Download gff for
FMO01020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1451 | 14..869 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:32 Download gff for
FMO01020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1451 | 14..869 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:32 Download gff for
FMO01020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17532724..17533199 | 394..869 | 97 | <- | Minus |
| 3R | 17533260..17533330 | 323..393 | 100 | <- | Minus |
| 3R | 17533623..17533927 | 14..322 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:46 Download gff for
FMO01020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13358446..13358921 | 394..869 | 97 | <- | Minus |
| arm_3R | 13358982..13359052 | 323..393 | 100 | <- | Minus |
| arm_3R | 13359345..13359649 | 14..322 | 98 | | Minus |
