FMO01023.5prime Sequence
1281 bp (633 high quality bases) assembled on 2008-03-07
> FMO01023.5prime
AAGAACAAAGTTATCAGTCGACATGACGCAAATGTCGCAGGATGAAATCA
TAACCAATACGAAAACAGTCCTTCAAGGCCTCGAAGCCTTGCGAGTGGAG
CATGTTTCGATTATGAACGGAATCGCCGAGGTGCAGAAGGACAATGAAAA
GTCGGACATGCTGCGAAAGAACATCGAGAACATCGAACTGGGCCTCAGCG
AGGCCCAGGTGATGATGGCCCTGACATCCCATCTGCAGAACATCGAGGCC
GAGAAGCACAAGCTTAAGACACAGGTGCGCCGCCTCCACCAGGAGAACGC
CTGGCTTCGCGACGAGCTGGCCAACACTCAGCAAAAGTTCCAGGCATCCG
ATCAGCTGGTGGCCCAACTAGAGGAGGAGAAGAAGCACCTGGAGTTCATG
GCGTCCGTGAAGAAGTACGACGAGAATCAGGAGCAGGACGACGTTTGCGA
CAAGTCCCGCACCGATCCCGTGGTCGAGCTATTCCCGGACGAGGAAAACG
AGGACAGACACAACATGTCGCCCACTCCGCCCAGCCAGTTCGCCAACCAG
ACTTCCGGCTACGAGATTCCAGCGCGTCTCCGTACTCTGCACAACCTGGT
CATTCAGTATGCATCGCAGGGAAGATACTAGGTAGCCGTTCCCCTCTGCA
AGCAAGCATTGGAATATCTCGAAAGGACAAGTGGTCACGACCATCCCGAT
GTTCAACCATGCTTAACATTTTGGCTCTTCGTGTACCGCGATCAGAACAA
GTATAAGGAGGCCGCCCATTTTACTCAACGACGCTCTGTCGATTTCGAGG
AAAGACACTGGGCTAGAACCATCCAGCGTGGCGGCACGTTGATCACTGTG
TGCTGTCCTCTATGGCAACGTGGCAAGTATAAATATTCTCGATGCCTCTG
TGCAAGCGTGCCTTGGATAATCCGAAAAGAAATCCTTGGTTAATGTGCAT
CCCGATGTTGCCTATGAATTTAACAATTTCTCCTTGCTCCTGCCGGAATC
AGGGCAAATACTACGAGGGTTGAAATGTTCTACAACGGAGCTCTCGAATT
CTACGAATCAAGTTTGGGTTCCGGATGGTCCTAAGGTTGCCCAATCAAAA
TATTATTCTGGTCTGTCTGGCTTATCTGGAGCATGTTTAATACCCGGAAC
TGGAATTTCTCTTTTATAGTCAGGTCTTTTGCCGGGAGCCTGAACGTGGT
AGTTTGGAACTCTCGTCGCATACAATGGCTATTTTTGTGGCGGTGTGTCT
GAGAGAGATGGGAGGGGGGACGGATACCCTA
FMO01023.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Klc-RC | 1876 | CG5433-RC | 156..1217 | 23..1091 | 4210 | 94 | Plus |
Klc-RB | 1841 | CG5433-RB | 118..1179 | 23..1091 | 4210 | 94 | Plus |
Klc-RA | 1843 | CG5433-RA | 120..1181 | 23..1091 | 4210 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12748056..12748657 | 624..23 | 2965 | 99.5 | Minus |
3L | 28110227 | 3L | 12747821..12747943 | 745..623 | 460 | 95.2 | Minus |
3L | 28110227 | 3L | 12747433..12747757 | 1073..743 | 455 | 84.1 | Minus |
Blast to na_te.dros performed 2014-11-28 19:42:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5A | 2841 | G5A G5A 2841bp | 880..912 | 753..785 | 111 | 81.8 | Plus |
FMO01023.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:41 Download gff for
FMO01023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5433-RA | 111..1171 | 13..1081 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:16 Download gff for
FMO01023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Klc-RA | 111..1171 | 13..1081 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:26 Download gff for
FMO01023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Klc-RA | 111..1171 | 13..1081 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:26 Download gff for
FMO01023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12747821..12747941 | 625..745 | 95 | <- | Minus |
3L | 12748056..12748666 | 13..624 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:16 Download gff for
FMO01023.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12740921..12741041 | 625..745 | 95 | <- | Minus |
arm_3L | 12741156..12741766 | 13..624 | 98 | | Minus |