FMO01024.5prime Sequence
1168 bp (894 high quality bases) assembled on 2008-02-20
> FMO01024.5prime
TTAAACAAAGTTATCAGTCGACATGATACACAGTCTGTTTATTGTAAACA
GCGGCGGCGAGGTCTTCCTGGAAAAGCATTGGCGCTCGGTTGTCTCGAGA
TCTGTGTGCGAATACTTCCTTGACGCCCAGCGCGCTGCTCCATATGATGT
GCCGCCGGTGATAGCCACGCCCCACTACTACCTGATTACAGTGCAAAGGG
ACACGGTGTCTTTGGTCGCCGCCTGCAAGCAGGAGGTGCCGCCGCTCTTT
GTCATCGAGTTCCTGCATCGCGTGGTGGACACCTTCCAGGACTATTTCGG
CGACTGCTCCGAGTCCGTGATCAAGGACAACTATGTGGTCGTTTACGAGC
TGCTGGACGAGATGCTCGATAATGGCTTCCCACTGGCCACCGAGAGCAAC
ATCCTCAAGGAGCTGATCAAGCCGCCCAATATCCTGTTGCATCATTGCCA
ACACGGTGACGGGCAAGAGCAATGTAAGCACTACTTTGCCCTCGGGTCAG
CTGTCGGCGGTTCGCTGGCGCAGAAGCGGCGTGAGGTACACCAACAACGA
GGCGTACTTCGATGTCATCGAGGAGGTGGACGCTATCATTGATAAATCCG
GATCCACGGTCTTTGCCGAGATCCACCGACATATCGACTGCTGCATTAAG
TTATCCGGCATGCCAGATCTGACGTTATCTTTCATGAATCCTCGCCTCTT
CGACGACGTTTCCTTCCATCCTTGCGTGCGCTACAAGCGCTGGGAGGCGG
GAGCGCCTGCTCTCCTTTATCCCGCCCGACGGAAACTTCCGCCTGATGTC
ATATCACATTAGCTCTCAGTTCCGTGGTGGCCATACCCATCTACATCACG
CACAACTTTTCGATCAAACGGGGTGAGCAGTGGCGTCTGGACCTCACGAT
TGGCCCGAGGACACCCTTGATCGCACCTATTGACAAGTGAAGCTTGGAGC
TGACATTGTCGCGGTGTGTGCTTAATTGCCTTATTGACCGCGAATCAGGG
AAAGTATACCTTCGATTCGGTGACCAGACGCTGTCCTGGGATGGTGGATC
GGATCGATGTTTCCATAGTTGCCATATATAGGGATTCGATTCAGTTACGT
CAGATACGACCAACATCGATGCCTATTCACTCCGTGAATGGTCAGATTCC
AATCTCTGCAACTCTATC
FMO01024.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cm-RB | 1774 | CG3035-RB | 55..1179 | 23..1152 | 4835 | 95.9 | Plus |
| cm-RA | 1469 | CG3035-RA | 55..1179 | 23..1152 | 4835 | 95.9 | Plus |
| Inx7-RB | 1690 | CG2977-RB | 1..159 | 993..1152 | 415 | 86.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7010519..7010844 | 472..146 | 1555 | 99.1 | Minus |
| X | 23542271 | X | 7009784..7010226 | 1079..633 | 1545 | 93.8 | Minus |
| X | 23542271 | X | 7010290..7010442 | 625..473 | 765 | 100 | Minus |
| X | 23542271 | X | 7010899..7010988 | 146..57 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:26:53 has no hits.
FMO01024.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:03 Download gff for
FMO01024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3035-RA | 37..1160 | 17..1143 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:58 Download gff for
FMO01024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 47..1170 | 17..1143 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:03 Download gff for
FMO01024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 47..1170 | 17..1143 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:03 Download gff for
FMO01024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7009774..7010226 | 633..1088 | 94 | <- | Minus |
| X | 7010283..7010442 | 473..632 | 98 | <- | Minus |
| X | 7010519..7010844 | 146..472 | 99 | <- | Minus |
| X | 7010900..7010987 | 58..145 | 100 | <- | Minus |
| X | 7011057..7011099 | 17..57 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:58 Download gff for
FMO01024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6903807..6904259 | 633..1088 | 94 | <- | Minus |
| arm_X | 6904316..6904475 | 473..632 | 98 | <- | Minus |
| arm_X | 6904552..6904877 | 146..472 | 99 | <- | Minus |
| arm_X | 6904933..6905020 | 58..145 | 100 | <- | Minus |
| arm_X | 6905090..6905132 | 17..57 | 93 | | Minus |
