FMO01025.5prime Sequence
898 bp (370 high quality bases) assembled on 2008-02-20
> FMO01025.5prime
TTTAAACAAAGTTATCAGTCGACATGGATAACATAGTCTACGACTTTGCC
AAGATCACGTTTCAAGCAAAAGACAACAGGTCACCCACTACTAACTCGAA
TCTGTCGTGGCAACTAAATCAGATGGCCTTGTCGGACATGGAGGAGATGC
AGGACACATCCGAGCCCATAGCTCCACCCGAATCCGATGACAATGTCAGC
AGTGAATCGCATGACTCCGACGATGTAGACTCGCAATTGAGTCGCTGCGA
GGACAACGATGACGACAGCGATTGCATCAGTGGATCCTCCAGACGCAGTT
CCACTTTTTGGAGCTCGAGCGGGCGTGGGCTCGTCGCAGAATGCCCCGCC
AGGGTGTCCAAGGACAACTTTTAACCGGATCTGCAGCGCCATCATGAAAC
CCATCAAAAAAAAAGCAACGGCAAAAAATGGACCCCAATGCCCTTTCACT
TTAAAACATTCAAAAAATTCTACACCACCGGGGCATGAAAAATTCCCCGC
CCCCCCATCTGGAAAAAATCTTCCAAGGAACCCGCGATGAAAAATGCCCC
CCAATGCCAAGAACAACAGCAAAAATGCTCCCATCCGCCGCCCAATGGAA
AGTAGTTAAGGGGGGGGGGTCCCAAATCTCCCCCGGCAAATTCCTTCAGC
GATGCGCCTGAAAAAAAAAAAATTCTGTGTAAAAAAAGCCCCCCAAAGGT
GAAAAAAAAACTTTGGGAACGTTTTCCACTCTCAAAAAATCTCTCTTGAA
CCAAGTTCCACGAACTGCTTAAAAAAACTTTCTCACGTGGGCATGGTCGG
GAGGGGAATAAATACAAAGACGGAGGAATCGCGGAGACCCTCACACATCC
CGAGAATCTCTGTAGCACAGGAGAAACATCACCTGTCGACAACGAGAC
FMO01025.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tan-RB | 1657 | CG6586-RB | 316..1043 | 24..763 | 2140 | 88.1 | Plus |
| tan-RA | 1494 | CG6586-RA | 316..1043 | 24..763 | 2140 | 88.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6055714..6056172 | 77..540 | 1525 | 92 | Plus |
| 3L | 28110227 | 3L | 6055608..6055665 | 24..81 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:27:03 has no hits.
FMO01025.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:07 Download gff for
FMO01025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6586-RA | 274..656 | 24..410 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:05 Download gff for
FMO01025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tan-RA | 316..698 | 24..410 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:09 Download gff for
FMO01025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tan-RA | 316..698 | 24..410 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:09 Download gff for
FMO01025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6055608..6055663 | 24..79 | 100 | -> | Plus |
| 3L | 6055717..6056043 | 80..410 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:05 Download gff for
FMO01025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6048708..6048763 | 24..79 | 100 | -> | Plus |
| arm_3L | 6048817..6049143 | 80..410 | 98 | == | Plus |
