FMO01027.5prime Sequence
1218 bp (960 high quality bases) assembled on 2008-02-20
> FMO01027.5prime
CAGTCGACATGGGCGACGGTGCTGGAAATTGGTGTCTCATTGAATCCGAT
CCCGGGGTATTCACAGAGCTTATTCGCGAATTCGGATGCGATGGGGCACA
GGTGGAGGAGATCTGGAGTCTCGACAGCGAGTCCTTCAAGAACCTAGAGC
CCATCCATGGTCTGATCTTCCTGTTCAAGTGGGTGCAGGAGGATGAACCC
GCTGGAAAAGTGGTCCTGGATCGGGAGAACATCTTCTTTGCCAAGCAGGT
GATCAACAACGCATGCGCCACCCAGGCGATCTTGAGCCTCCTGATGAACC
TGGATCATGAGGACATCAAATTGGGCGAGACCCTCACCAATTTTAAGGAG
TTCTGCCAGTGCTTCGATCCGTACAACAAGGGATTAACTTTGAGCAACGC
TAGCCAGATTCGCACGGTGCATAACTCTTTTGCTCGCCCAACACTCTTCG
AGCTGGACACTAAGAACCAGAAGAAGGACGATGACGTGTACCACTTTGTC
GGCTATATGCCCATCGGAGGAAGACTGTACGAGCTGGACGGCCTGAGGGA
GGGACCCATTGATCTTGGTGAGATCAAGTCGGAGCAGAACTGGATCGATG
TGGTGCGTCCGATTATTGAGAAGCGCATGCAGCGCTACAGCGACGGCGAG
ATCCACTTCACTCTGATGGCTCTGATCTCGGACAGGCAGCGCATTTATGA
ACAGCAGATTGAGAAGCTGCTTAATCCGGCGCCCAATGCTATGGACACTG
AGGAGGATCGACAGGCGGAGATCAGTAGCTTGCGCACGTACATAGAGTAC
GAGATTCAGAAAAAGAAGCGCTACAAAGTGAGAATGTGCGGCGCAAGCAC
AACTATTTGCTCTTCATCGTGAGCTCTTAAAATTCTGGGCGAGAACGGAC
ACTAATGCTCATCTACGAGAAGCCAAGCAGAGGCGCTAGACGCGAGCAGC
GCACGCAAAAAGATACCGACGCAGCTTTCTAGACCATTCGTTGGGGCGGC
GGGCCCAGTAGTGGTCTAATCATAAATCATAATCCTATCTTAATCCACTA
GGCTAAGGAGATCCTGTCCTGACATATTGCCTGATCTCACCAATAAAACG
CCCCGCGGCCACCGACGTTGGACAAATCGAATGGAATCTGAGCATATCGG
ATTACAAGGATCACGAACCGAATCAATAAGCCGCCCGCATCTACTGCAAA
CGGGTGTGAATACTATTA
FMO01027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uch-L5-RB | 1153 | CG3431-RB | 117..1090 | 7..970 | 4545 | 98.5 | Plus |
| Uch-L5-RA | 1394 | CG3431-RA | 117..1090 | 7..970 | 4545 | 98.5 | Plus |
| Uch-L5R-RA | 1298 | CG1950-RA | 642..835 | 489..682 | 280 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9475839..9476693 | 933..84 | 3950 | 98.8 | Minus |
| 3L | 28110227 | 3L | 9476771..9476849 | 85..7 | 395 | 100 | Minus |
| X | 23542271 | X | 12055801..12055994 | 682..489 | 280 | 76.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:00:48 has no hits.
FMO01027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:08 Download gff for
FMO01027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3431-RA | 119..1108 | 1..981 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:19 Download gff for
FMO01027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uch-L5-RA | 111..1100 | 1..981 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:42 Download gff for
FMO01027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uch-L5-RA | 111..1100 | 1..981 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:42 Download gff for
FMO01027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9475787..9476692 | 85..981 | 97 | <- | Minus |
| 3L | 9476772..9476853 | 1..84 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:19 Download gff for
FMO01027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9468887..9469792 | 85..981 | 97 | <- | Minus |
| arm_3L | 9469872..9469953 | 1..84 | 95 | | Minus |
