FMO01029.5prime Sequence
474 bp (181 high quality bases) assembled on 2008-02-20
> FMO01029.5prime
CAGTCGACATGGCAGCCGGTACCACACTACAGAAGGCCATCGATCTGGTG
ACCAAGGCCACCGAGGAGGATCGAAATAAGAACTACGCGGAGGCACTGCG
TCTGTATGAGCACGGGGTGGAGTACTTCCTGCACACCATCAAATATGAGG
CACAGGGCGAGAGGCCAATGACTCGATACGGGCCAGTGCCTGCAGATTGG
ACGGGTCAGAGTAAGAGACTGAGAAGAAAAAGAACGTCAAGAGTTTACAG
GGAAGAGGAAACAAAGGAAGGAAGAGAGGGCAATAAAAAAAAGGAAACGG
GGAGTTGTAAAAACCAGGCGGGCAATGCGGCCGCCCCAAGGGCGAAGGGC
TTTTGGATAACCCGTTCCCCGGAAATTCCGGAAACCCTGTTCCCCCGAAA
AAATAAGGAGGGGGCGCAGAAACACCCCCCCCTTTGGCAATAAAGAAAAG
GGGGGGGGAAAAAAATAAAAAAAA
FMO01029.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps4-RB | 2411 | CG6842-RB | 164..353 | 8..195 | 885 | 98.4 | Plus |
| Vps4-RA | 2031 | CG6842-RA | 164..353 | 8..195 | 885 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17908577..17908713 | 8..144 | 685 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 7746..7790 | 253..297 | 108 | 71.1 | Plus |
FMO01029.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:48 Download gff for
FMO01029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6842-RA | 162..370 | 1..205 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:26:57 Download gff for
FMO01029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps4-RA | 157..365 | 1..205 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:01 Download gff for
FMO01029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps4-RA | 157..365 | 1..205 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:01 Download gff for
FMO01029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17908571..17908713 | 1..144 | 97 | -> | Plus |
| X | 17908808..17908849 | 145..185 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:26:57 Download gff for
FMO01029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17802604..17802746 | 1..144 | 97 | -> | Plus |
| arm_X | 17802841..17802882 | 145..185 | 95 | == | Plus |
