FMO01032.5prime Sequence
729 bp (729 high quality bases) assembled on 2008-02-20
> FMO01032.5prime
CAGTCGACATGGCTACCGAACGATACAGCTTTTCGTTGACCACGTTCAGT
CCTTCCGGAAAACTCGTCCAACTGGAGTATGCATTGGCGGCCGTATCTGG
CGGAGCTCCCTCCGTGGGCATTATAGCTTCCAACGGCGTCGTCATTGCCA
CAGAGAACAAACACAAGTCACCGCTGTATGAGCAGCACAGTGTACATCGC
GTGGAGATGATCTACAACCACATCGGCATGGTGTACTCGGGAATGGGTCC
GGACTACCGCCTGCTGGTCAAGCAGGCCCGCAAGATCGCCCAGACGTACT
ACCTGACCTACAAGGAGCCGATTCCAGTGTCACAGCTGGTGCAGCGCGTG
GCCACGCTCATGCAGGAGTACACTCAGTCCGGTGGCGTTCGTCCCTTTGG
CGTTTCCCTACTGATCTGCGGCTGGGACAATGATCGTCCGTATCTCTACC
AATCCGATCCTTCGGGCGCCTACTTCGCCTGGAAGGCCACTGCCATGGGC
AAGAACGCAGTGAACGGCAAAACTTTCCTGGAGAAGCGCTACAGCGAAGA
TCTGGAGCTGGACGACGCTGTTTCACACCGCCATCCTTACGCTGAAAGAA
GGTTTTGAGGGAAAAATGACTGCCGACAACATTGAGATCGGAATCTGCGA
CCAGAACGGATTCCAGCGTCTGGACCCCGCCTCAATCAAGGACTACTTGG
CCAGCATCCCCGCAAGCTTTCTAGACCAT
FMO01032.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha2-RA | 920 | CG5266-RA | 121..822 | 9..711 | 3475 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12431743..12432001 | 124..382 | 1295 | 100 | Plus |
| 3R | 32079331 | 3R | 12432286..12432458 | 538..711 | 805 | 98.9 | Plus |
| 3R | 32079331 | 3R | 12432066..12432222 | 382..538 | 785 | 100 | Plus |
| 3R | 32079331 | 3R | 12431581..12431660 | 47..126 | 400 | 100 | Plus |
| 3R | 32079331 | 3R | 12431441..12431481 | 9..49 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:44:18 has no hits.
FMO01032.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:10 Download gff for
FMO01032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5266-RA | 109..825 | 1..719 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:09 Download gff for
FMO01032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha2-RA | 113..829 | 1..719 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:57 Download gff for
FMO01032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha2-RA | 113..829 | 1..719 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:57 Download gff for
FMO01032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12431433..12431481 | 1..49 | 91 | -> | Plus |
| 3R | 12431584..12431660 | 50..126 | 100 | -> | Plus |
| 3R | 12431746..12432001 | 127..382 | 100 | -> | Plus |
| 3R | 12432067..12432222 | 383..538 | 100 | -> | Plus |
| 3R | 12432287..12432465 | 539..719 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:09 Download gff for
FMO01032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8257155..8257203 | 1..49 | 91 | -> | Plus |
| arm_3R | 8257306..8257382 | 50..126 | 100 | -> | Plus |
| arm_3R | 8257468..8257723 | 127..382 | 100 | -> | Plus |
| arm_3R | 8257789..8257944 | 383..538 | 100 | -> | Plus |
| arm_3R | 8258009..8258187 | 539..719 | 97 | | Plus |
