FMO01036.5prime Sequence
631 bp (611 high quality bases) assembled on 2008-02-20
> FMO01036.5prime
AAAACAAAGTTATCAGTCGACATGGCTGATCGGGCTATCAAGCTGCTGGT
GATCGGGGAAAGCGGCGTGGGCAAGTCCAGTTTGATACGTCGCTTCGTGG
AGAACAAGTTCGACCAGAACCATGACGTCACGATTGGCATGGACTTCAAG
AGCAAAGTGATGCAGGTGGACGGCATAGACTACAAGGTGGCCCTGTGGGA
TACGGCGGGCGCCGAGAGATTCCGCAGCCTGACGCCCAGTTTCTATCGGA
AGGCTCTGGGCGCCATTCTAGTGTACGACATCACCAGCAGGGACAGCCTG
GTCAAGCTGGAAACCTGGCTGGCTGAACTGGATAGCTACAGCGACAATCC
CAACATTGCCATCATTGTGGTAGGCAACAAGATCGACGAGGAGCGAGTTG
TGGATCGCGAGGAGGGTCGAAAGTTTGCCAGGAAGCATAGGGCGCTCTTC
ATCGAGACCTCAGCCAAATGCGATCAGTTCGTCAGCGATGTGTTCAAAGA
TGTGGTGGAGAAGATCGTCTCCTCCGAATACTTCAACAATGGCAATGCCT
CTGCCGGTCTGGACATCGCCAGCGATCGGGATCTGGAGGCAAGCGCGTCT
ACGTGTTACTGTTTTATTTTTTCTAGACCAT
FMO01036.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab18-RA | 833 | CG3129-RA | 152..743 | 22..613 | 2930 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5671081..5671515 | 513..79 | 2160 | 99.8 | Minus |
| X | 23542271 | X | 5670917..5671018 | 613..512 | 495 | 99 | Minus |
| X | 23542271 | X | 5671603..5671661 | 80..22 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:09 has no hits.
FMO01036.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:06 Download gff for
FMO01036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3129-RA | 143..745 | 14..619 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:27 Download gff for
FMO01036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab18-RA | 146..748 | 14..619 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:16 Download gff for
FMO01036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab18-RA | 146..748 | 14..619 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:16 Download gff for
FMO01036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5670920..5671016 | 514..610 | 98 | <- | Minus |
| X | 5671081..5671513 | 81..513 | 99 | <- | Minus |
| X | 5671603..5671665 | 14..80 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:27 Download gff for
FMO01036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5564953..5565049 | 514..610 | 98 | <- | Minus |
| arm_X | 5565114..5565546 | 81..513 | 99 | <- | Minus |
| arm_X | 5565636..5565698 | 14..80 | 94 | | Minus |
