FMO01039.5prime Sequence
518 bp (469 high quality bases) assembled on 2008-02-20
> FMO01039.5prime
CAATCCACATGGTGGACGACAGCACTCGAAAAACGTTGAGCAACATTCCG
CTGCTGCAGATTCGCGCTGGTCCGCGCGAAAAGGATGTGTGGGTGCAGCG
GCTCACGGAGGAGTACCAGGCACTAATTAATTATGTGGAGAACAACAAAC
AGTCCGGCAGCGACTGGTTCCGTCTGGAATCCAACAAGGAGGGCACCAAG
TGGTTCGGAAAGTGTTGGTACATGCACAACCTGTTAAAGTACGAGTTCGA
CGTGGAGTTCGACATTCCAGTGACATACCCAACCACCGCGCCCGAGATTG
CCCTGCCAGAACTTGACGGCAAGACAGCGAAGATGTACCGTGGTGGCAAG
ATCTGTCTGACGGATCACTTTAAGCCACTGTGGGCACGCAATGTTCCCAA
GTTTGGGATCGCCCACGCTATGGCTCTGGGTCTTGCTCCCTGGCTGGCCG
TGGAGATTCCGGATCTCATCTAGAAGGGAATCATTACGTACAAGGAAAAG
GCAAGCTTTCTAGACCAT
FMO01039.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8386-RA | 656 | CG8386-RA | 101..592 | 9..500 | 2400 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16007087..16007386 | 431..132 | 1485 | 99.7 | Minus |
| 2R | 25286936 | 2R | 16007446..16007567 | 130..9 | 595 | 99.2 | Minus |
| 2R | 25286936 | 2R | 16006957..16007025 | 500..432 | 330 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:00:54 has no hits.
FMO01039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:15 Download gff for
FMO01039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8386-RA | 89..589 | 9..511 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:21 Download gff for
FMO01039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8386-RA | 101..601 | 9..511 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:46 Download gff for
FMO01039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8386-RA | 101..601 | 9..511 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:46 Download gff for
FMO01039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16006948..16007025 | 432..511 | 92 | <- | Minus |
| 2R | 16007087..16007386 | 132..431 | 99 | <- | Minus |
| 2R | 16007445..16007567 | 9..131 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:21 Download gff for
FMO01039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11894453..11894530 | 432..511 | 92 | <- | Minus |
| arm_2R | 11894592..11894891 | 132..431 | 99 | <- | Minus |
| arm_2R | 11894950..11895072 | 9..131 | 98 | | Minus |
