FMO01046.5prime Sequence
883 bp (840 high quality bases) assembled on 2008-03-07
> FMO01046.5prime
ATGGCCAAGTTATCAGTCGACATGGAGAAAAACAAATATGTACCACGTGT
AAATCAATAGATGCCATCTATTTGAACAAGGACATTGCCCGCCTGTTCCC
CGATAATCTGCTGGAGAACTTGCAAGCCATCTCACCCGTTTTGTTCATCA
AAATCCAACCGGAGCTCGACTTGATCATTCAATCCGCAATTTGGTTTGGT
TCCGTCGGCAAGCGGTGCTCCACTTTTGGCCAACAGCTACTGGTTCTGGC
TTACGATGCCGAAAAGCTGACCGTTTCCAGGCTGGTGCTCCATTTCATCC
TGACCGTCTTGCCGGGCTACGTGAAGAGCTGGGAGGAGCGACTCTTAACA
AGGCGCGTAGAATGGTTTAGCGAGGCGATTATGTGGGTGGAGAACAGTGC
CCTGATACTGAACATCCTCAATTACTTTCGGTTTTTGAAGACAGGACGAA
AACCCACTTTGGTGGACTACTTATTGGGATTGGACTACATTAGTCTGCGG
AACAATCAAAGGAGAGACATTGGCTACAAGTACCTAACGAGGGAGCTGCT
GTGGGGAGGATTTATGGAAATCCTCGGACTGGTGTTGCCCATCATCAATT
TCCGTAAGCTACAAAGAGTGCTAAAATCATGGACATTTTCCGGACGACGG
TTAGAGGATAGAGATGGTCCGGCTTTCCTGGCGCCGCAGATGACACTAAG
CACCACCTTGCACATTCTGTGGAGAGCGACCTCACATTGCCCCACCACAT
GGGCTGTGGTCATATTTATTGCTATTTACTGCCTTAATGCAAATGTTTTA
ACGGATGCCAGTTTCTGCTGCCCCAACTGCGGTTCTGCGTGTCCTGAGTC
GGGAATCCAAAGTGTCGCAAGCTTTCTAGACAT
FMO01046.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex2-RA | 1051 | CG7081-RA | 105..947 | 22..866 | 4040 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8339390..8339822 | 135..567 | 2120 | 99.3 | Plus |
| 3L | 28110227 | 3L | 8339875..8340172 | 566..866 | 1355 | 99 | Plus |
| 3L | 28110227 | 3L | 8339257..8339334 | 57..134 | 345 | 96.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:25:20 has no hits.
FMO01046.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:50 Download gff for
FMO01046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7081-RA | 103..945 | 22..866 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:14 Download gff for
FMO01046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex2-RA | 105..947 | 22..866 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:40 Download gff for
FMO01046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex2-RA | 105..947 | 22..866 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:40 Download gff for
FMO01046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8339155..8339190 | 22..56 | 97 | -> | Plus |
| 3L | 8339257..8339334 | 57..134 | 96 | -> | Plus |
| 3L | 8339390..8339821 | 135..566 | 99 | -> | Plus |
| 3L | 8339876..8340172 | 567..866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:14 Download gff for
FMO01046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8332255..8332290 | 22..56 | 97 | -> | Plus |
| arm_3L | 8332357..8332434 | 57..134 | 96 | -> | Plus |
| arm_3L | 8332490..8332921 | 135..566 | 99 | -> | Plus |
| arm_3L | 8332976..8333272 | 567..866 | 99 | | Plus |
