FMO01049.5prime Sequence
686 bp (443 high quality bases) assembled on 2008-02-20
> FMO01049.5prime
CTTAAAATAAAAATATCAGTCGACATGTCCTACGCGTACTTGTCCAAATA
GATCATTATCGGAGACACAGGGGTGGGCAAGTCCTGTCTGCTGCTCCAGT
TCACGGACAAGCGATTCCTGCCGGTGCACGACCTGACCATTGGCGTGGAG
TTCGGAGCACGCATGATCACCATCGACGGCAAGCAGATCAAGCTTCAGAT
CTGGGACACGGCTGGGCAGGAGGCTTTCAGATCTATCACACGCTCTTATT
ACCGCGGAGCTGCTGGCGCCTTGCTGGTGTACGACATCACGCGACGGGAG
ACCTTCCACCACCTGACCACCTGGCTGGAGGATGCGCGTCAGCACTCGAA
CTCGAACATGGTCATTATGCTGATAGGCAACAATAGCGATTTGGATTCCC
GGTGTGAGGTGAAGAAAGAGGAGGGCGAGGCCTTCGCCCGCGAGCACGGA
CTGGTCTTCATGGAGACTTCTGCGCGCACAGCTGCCAACGTAGAGGAGGC
GTTCATAAATACGGCCAAAGAGATTTACGAGAAAGATCCAGGAAGGTGTC
TTCGACATCAACAATGAGGCAAACGGCATTACTATCGGCCCACAGCACTC
CCCCACAAAACCCGTCGCTCCCTGGAGTCGGAGCATCTTCTTGTATTTTT
TTTATTTTTGTCCGCTGCGCATGCTTTCTAGAGCAT
FMO01049.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab2-RB | 1087 | CG3269-RB | 144..752 | 23..633 | 2795 | 97.4 | Plus |
| Rab2-RA | 1712 | CG3269-RA | 144..752 | 23..633 | 2795 | 97.4 | Plus |
| Rab14-RD | 878 | CG4212-RD | 105..343 | 46..284 | 310 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6698047..6698386 | 229..569 | 1595 | 98.5 | Plus |
| 2R | 25286936 | 2R | 6697413..6697575 | 68..230 | 770 | 98.2 | Plus |
| 2L | 23513712 | 2L | 14357540..14357688 | 136..284 | 265 | 78.5 | Plus |
| 2R | 25286936 | 2R | 6696882..6696940 | 23..81 | 220 | 91.5 | Plus |
| 2R | 25286936 | 2R | 6698444..6698509 | 567..633 | 210 | 91 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:15:17 has no hits.
FMO01049.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:09 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:29 Download gff for
FMO01049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab2-RA | 144..752 | 23..633 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:20 Download gff for
FMO01049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab2-RA | 144..752 | 23..633 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:20 Download gff for
FMO01049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6697416..6697575 | 71..230 | 98 | -> | Plus |
| 2R | 6698049..6698385 | 231..568 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:29 Download gff for
FMO01049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2584921..2585080 | 71..230 | 98 | -> | Plus |
| arm_2R | 2585554..2585890 | 231..568 | 98 | -> | Plus |
