FMO01052.5prime Sequence
785 bp (785 high quality bases) assembled on 2008-02-20
> FMO01052.5prime
CAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGGCCTCGCAG
TTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCAAAGGCGGT
GGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGCCGTGGTGC
TGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAGACGCCGGC
GGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTGGCCGGCTT
GGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGAGGCAGCCA
ACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACCTGTGCCAC
CGAGTCGCCGGCTACGTTCACGCCTACACTCTGTACAGTGCCGTCCGCCC
CTTCGGACTTTCCATCATTCTCGCCTCCTGGGACGAAGTAGAGGGGCCAC
AGCTCTACAAGATCGAGCCGTCCGGCTCCTCCTTCGGTTACTTCGCCTGC
GCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAGAAGCTCAA
GATGGATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGAAATCATCT
ACAAAGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCGAAATGGGT
TTGGTGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCCTCAGAACT
GACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGACGAAGACA
GCGACAATGAGACGCACGCAAGCTTTCTAGACCAT
FMO01052.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha7-RA | 976 | CG1519-RA | 120..878 | 9..767 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9847073..9847638 | 595..30 | 2830 | 100 | Minus |
| 2R | 25286936 | 2R | 9846734..9846905 | 767..596 | 860 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 1817..1864 | 518..567 | 136 | 80 | Plus |
FMO01052.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:20 Download gff for
FMO01052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1519-RA | 111..881 | 1..775 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:13 Download gff for
FMO01052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha7-RA | 113..883 | 1..775 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:42 Download gff for
FMO01052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha7-RA | 113..883 | 1..775 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:42 Download gff for
FMO01052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9846729..9846905 | 596..775 | 97 | <- | Minus |
| 2R | 9847073..9847638 | 30..595 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:13 Download gff for
FMO01052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5734234..5734410 | 596..775 | 97 | <- | Minus |
| arm_2R | 5734578..5735143 | 30..595 | 100 | <- | Minus |
