FMO01053.5prime Sequence
416 bp (117 high quality bases) assembled on 2008-02-20
> FMO01053.5prime
AACAAAGTTATCAGTCGACATGTCCAATAAAATCAACCCGAAGCGCCGCG
AACCGACAGCAGCAGCAGCAGGAGCCGGTGCCACGGGAGTGGCCACCAAC
ACGAGCACCTCGACCGGATCTCAGTGCGGCACACGTCTTCGGCAAAATCT
CGTGTAGCTTTCTGCTCGCGTGCGGTCGGTGCGCACTATCGGGTGTCCGG
GCTGAATTAACCATTGGTTCCGGCCTTGGGGCTGTCCATCCTGTGGCCTG
GGGGTGGTGGAAATCACTGGGTGGAGTGGCCAAATTTCGGAAACTTGAAA
CCCTTCTGTAAAAAAAAAAAAAAGAAGGGGCGCTCCTTTGGCGCGCCTTT
GTGACGGCTTTTTTTTTTTTTTGGATAAACAACAACGGGGGAGATGTTTG
CCCCCCCCCCCAAATA
FMO01053.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sina-RC | 3124 | CG9949-RC | 830..957 | 20..143 | 525 | 96.1 | Plus |
sina-RB | 2482 | CG9949-RB | 188..315 | 20..143 | 525 | 96.1 | Plus |
sina-RA | 3191 | CG9949-RA | 897..1024 | 20..143 | 525 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16856418..16856518 | 20..120 | 505 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:46:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 630..728 | 119..19 | 130 | 62.7 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 973..1033 | 52..109 | 126 | 72.1 | Plus |
FMO01053.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:58 Download gff for
FMO01053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9949-RA | 1899..2003 | 15..120 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:40 Download gff for
FMO01053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RA | 893..997 | 15..120 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:32 Download gff for
FMO01053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sina-RA | 893..997 | 15..120 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 22:32:32 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:44:40 has no hits.