Clone FMO01053 Report

Search the DGRC for FMO01053

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:10
Well:53
Vector:pMK33-CFH-BD
Associated Gene/Transcriptsina-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01053.5prime Sequence

416 bp (117 high quality bases) assembled on 2008-02-20

> FMO01053.5prime
AACAAAGTTATCAGTCGACATGTCCAATAAAATCAACCCGAAGCGCCGCG
AACCGACAGCAGCAGCAGCAGGAGCCGGTGCCACGGGAGTGGCCACCAAC
ACGAGCACCTCGACCGGATCTCAGTGCGGCACACGTCTTCGGCAAAATCT
CGTGTAGCTTTCTGCTCGCGTGCGGTCGGTGCGCACTATCGGGTGTCCGG
GCTGAATTAACCATTGGTTCCGGCCTTGGGGCTGTCCATCCTGTGGCCTG
GGGGTGGTGGAAATCACTGGGTGGAGTGGCCAAATTTCGGAAACTTGAAA
CCCTTCTGTAAAAAAAAAAAAAAGAAGGGGCGCTCCTTTGGCGCGCCTTT
GTGACGGCTTTTTTTTTTTTTTGGATAAACAACAACGGGGGAGATGTTTG
CCCCCCCCCCCAAATA

FMO01053.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
sina-RC 3124 CG9949-RC 830..957 20..143 525 96.1 Plus
sina-RB 2482 CG9949-RB 188..315 20..143 525 96.1 Plus
sina-RA 3191 CG9949-RA 897..1024 20..143 525 96.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16856418..16856518 20..120 505 100 Plus
Blast to na_te.dros performed 2014-11-28 21:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 630..728 119..19 130 62.7 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 973..1033 52..109 126 72.1 Plus

FMO01053.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:58 Download gff for FMO01053.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9949-RA 1899..2003 15..120 98 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:40 Download gff for FMO01053.5prime
Subject Subject Range Query Range Percent Splice Strand
sina-RA 893..997 15..120 98 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:32 Download gff for FMO01053.5prime
Subject Subject Range Query Range Percent Splice Strand
sina-RA 893..997 15..120 98 == Plus
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 22:32:32 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:44:40 has no hits.