FMO01054.5prime Sequence
1240 bp (920 high quality bases) assembled on 2008-03-07
> FMO01054.5prime
AAAGACGAAGTTATCAGTCGACATGTGCGCGTGCCTAATCGCTAAGATAA
TTCTATGTAGTTTTCGTTTGTATACAATAAGTGCCTTTTATATGTTAACG
ACGATGTCAGCCAGCAGCAATACAAACAGCCTGATCGAGAAGGAGATCGA
CGACGAGGACATGCTTTCGCCGATCAAGTCCAACAACCTGGTGGTGCGGG
TCAACCAGGACACGGACGACAACCTGCAGGCGCTATTCGACAGCGTCCTG
AATCCGGGTGACGCCAAGCGCCCGCTGCAGCTGCCCCTGCGCATGCGGAA
GCTGCCCAACTCCTTCTTCACGCCCCCGGCGCCCTCGCACTCGCGGGCCA
ACAGCGCCGACTCCACCTACGACGCGGGCTCCCAGTCGAGCATCAACATC
GGGAACAAGGCGTCCATCGTCCAGCAGCCAGATGGTTTTTTTCCCATCGC
CGCCATCCCCCAGCTCCAGATTCAGCCGTCTCCCCAGCACAGCCGCCTGG
CGATACATCACTCCCGAGCCCGCAGCAGCCCCGCCTCGCTGCAGCAGAAC
TACAATGTGCGCGCCCGGAGCGACGCAGCAGCAGCCAACAATCCGAATGC
CAATCCGAGCAGCCAACAGCAGCCCGCTGGGCCCACTTTCCCAGAGAACA
GTGCCCAAGAGTTCCCCAGCGGCGCCCCGGCCAGCTCGGCCATTGATCTG
GACGCCATGAACACCTGCATGTCGCAGGACATTCCCATGTCCATGCAGAC
AGTGCACAAGAAGCAGCGCTCCTACGACGTCATCAGCCTCATTCAGTTGA
ACCGCCAACTAGGCGTCTTGCCGCCGGGATGGGAGCAAGCCTAGACTAAT
GATGGCCAGATCTACTACTTGAATCATAACTACAAAATCTACGCAGTGGG
GAGGATCCCAGAATCCATATCGCTAGCAGCACAAATCTTGAAGGGCCGAC
GATAAAGCAGAATTGAATTCTGGGCTTAGCGTGCTCGACTGCTCAGATAC
TAGTGTCTTTCCCTCCAGATGAGATTATTCTTTGCAGTAACTTGTTCATG
ACGCCCAGGCATTGAATTCGCCGCTTTCCACAAACTGACGATTTGATGCT
TTAATTATGCAGCTTTTCTAAACATTCGTTTGGCGCGGTCAGTAAATGTC
TATGAATCCTATTCTATCGATTCCCACTTAGCTCTTAAGAGAGATCTCTG
TGTATTCATGGAACTTGTGGCTGGAATTCTCTCTCTCCAC
FMO01054.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-RD | 1369 | CG4005-RD | 171..1250 | 23..1095 | 4680 | 96.5 | Plus |
| yki-RF | 1525 | CG4005-RF | 171..1112 | 23..963 | 4370 | 98 | Plus |
| yki-RG | 1460 | CG4005-RG | 106..1047 | 23..963 | 4370 | 98 | Plus |
| yki-RF | 1525 | CG4005-RF | 1272..1406 | 969..1095 | 335 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24067465..24068315 | 873..23 | 4105 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:31:17 has no hits.
FMO01054.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:59 Download gff for
FMO01054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4005-RB | 77..1132 | 15..1069 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:00 Download gff for
FMO01054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 166..1221 | 15..1069 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:04 Download gff for
FMO01054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RD | 166..1221 | 15..1069 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:04 Download gff for
FMO01054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24067465..24068320 | 15..873 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:00 Download gff for
FMO01054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19954988..19955843 | 15..873 | 98 | | Minus |
