FMO01055.5prime Sequence
897 bp (897 high quality bases) assembled on 2008-02-20
> FMO01055.5prime
CAGTCGACATGGGTGACAACGAACAGAAGGCGCTCCAGCTGATGGCCGAG
GCGGAGAAGAAGTTGACCCAGCAGAAGGGCTTTCTGGGATCGCTGTTCGG
AGGGTCCAACAAGGTGGAGGACGCCATCGAGTGCTACCAGCGGGCGGGCA
ACATGTTTAAGATGTCCAAAAACTGGACAAAGGCTGGGGAGTGCTTCTGC
GAGGCGGCAACTCTACACGCGCGGGCTGGAAGTCGTCACGATGCCGGAAC
CTGCTACGTAGACGCTTCCAACTGCTACAAGAAGGTGGACGTGGAGAGCG
CCGTCAACTGCCTGATGAAGTCCATCGACATCTACACGGATATGGGCCGC
TTTACGATGGCTGCCAAACATCACCAAAGCATCGCCGAGATGTACGAAAG
TGATCCCAATAATCTGGCCAAGTCTATTCAGCACTATGAGCAGGCGGCTG
ATTACTTCAAGGGTGAAGAGTCGGTCAGTTCGGCCAACAAGTGCATGTTG
AAGGTGGCCCAGTACGCCGCCCAACTGGAGGATTACGAGAAAGCAATATC
CATATACGAGCAGGTGGCCGCCTCCTCGCTGGAGAGCTCTCTGCTCAAGT
ACAGTGCCAAGGAGTACTTCTTCAGGGCCGCTCTATGCCATCTCAGCGCG
GACCTCCTGAACGCCCAGCATGCCATCGAAAAGTATGCGCAGCAGTACCC
AGCATTCCAGGACTCCAGGGAGTTCAAGCTCATCAAGGTGTTGTGCGAGA
ATCTAGAGGAACAGAACATCGAGGGATTCACAGAGGCCGTCAAGGACTAC
GACAGCATCTCCCGGGTTGGATCAGTGTACACCACCATCTTGCTGCGGAT
CAGATGCTGCGACGAGATCCCGATCTGCGAGCAGCTTTCTAGACCAT
FMO01055.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alphaSnap-RA | 2070 | CG6625-RA | 157..1037 | 4..880 | 4230 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20314982..20315306 | 416..740 | 1610 | 99.7 | Plus |
3L | 28110227 | 3L | 20314607..20314924 | 100..417 | 1590 | 100 | Plus |
3L | 28110227 | 3L | 20315396..20315512 | 736..852 | 490 | 98.3 | Plus |
3L | 28110227 | 3L | 20313788..20313884 | 4..100 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:01:00 has no hits.
FMO01055.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:21 Download gff for
FMO01055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6625-RA | 153..1035 | 1..880 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:23 Download gff for
FMO01055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap-RA | 155..1037 | 1..880 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:49 Download gff for
FMO01055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alphaSnap-RA | 155..1037 | 1..880 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:49 Download gff for
FMO01055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20313786..20313884 | 1..100 | 98 | -> | Plus |
3L | 20314608..20314923 | 101..416 | 100 | -> | Plus |
3L | 20314983..20315303 | 417..737 | 99 | -> | Plus |
3L | 20315398..20315544 | 738..880 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:23 Download gff for
FMO01055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20306886..20306984 | 1..100 | 98 | -> | Plus |
arm_3L | 20307708..20308023 | 101..416 | 100 | -> | Plus |
arm_3L | 20308083..20308403 | 417..737 | 99 | -> | Plus |
arm_3L | 20308498..20308644 | 738..880 | 95 | | Plus |