FMO01056.5prime Sequence
884 bp (884 high quality bases) assembled on 2008-02-20
> FMO01056.5prime
CAGTCGACATGGAGCAGACACCGATCACCGATGCGGAGAAGGTGCGCATC
GTATCGGACTTCATCCTACATGCGCCGCCCGGCGAGTTCAACGAAGTGTT
CAACGATGTGCGGGAGCTCCTCAAGAATGACACTCTGCTAAAGGATGGGG
CTAGCCACGCCTTCGCCCAATACAACAAGGACCAGCTGACTCCGGTTCGC
ATCGAGGGCACCGATCATAACGCCATCATATCGGAACACAACGATCTGGG
AAACGGTCGCTTCTACGACCCGCGCACAAAGCAAGCCTTCAAATACGACC
ACCTCCGAAAAGAGGCTTCCGACTACCAGGACGTAGAGGCAGATGCCACT
GCGGAGCCCTGGAGGGCGGCCCTCGACCTGGAGACGCTCGCCTACACTGC
CAGTCATTATAGACACGGGGTCAGCTCTGTTTTTGGAAAGGCGCAGGGCA
ACCAGATCACCCTGACCATTTGCATCGAAGACCACCAGTTCCAGCCGAAG
AACTATTGGAATGGCCGATGGCGCTCCCAGTGGCATGTGACCTTCCAGGC
GGGCAGCGGAACCGCCGAACTGAAGGGTGTGCTCAAGGTGCAGGTGCATT
ACTACGAGGACGGCAACGTCCAGCTGGTGTCCTCAAAGGAGTGCCGCGAA
AGCGTGGTGGTCAGCAACGAGCAGCAGGTGGCCAAGGAGGTGATCCGTCT
GATCGAGGACGCCGAGAATGAGTACCAGCTGGCCATTTCGGAGAACTATC
AGACGATGTCGGACACGACATTCAAGGCAATGCGTCGCCAGTTGCCCATC
ACCAGGACCAAGATCGACTGGAGCAAAATCGTCTCGTACAGCATTGGCAA
GGAACTGAAGACGCAAGCAAGCTTTCTAGACCAT
FMO01056.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpa-RA | 1918 | CG10540-RA | 236..1093 | 9..866 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21058611..21059058 | 419..866 | 2240 | 100 | Plus |
| 2R | 25286936 | 2R | 21058022..21058263 | 9..250 | 1210 | 100 | Plus |
| 2R | 25286936 | 2R | 21058383..21058555 | 249..421 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:15:56 has no hits.
FMO01056.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:00 Download gff for
FMO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10540-RA | 222..1093 | 1..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:47 Download gff for
FMO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpa-RA | 226..1097 | 1..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:35 Download gff for
FMO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpa-RA | 226..1097 | 1..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:35 Download gff for
FMO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21058012..21058262 | 1..249 | 98 | -> | Plus |
| 2R | 21058384..21058553 | 250..419 | 100 | -> | Plus |
| 2R | 21058612..21059062 | 420..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:47 Download gff for
FMO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16945517..16945767 | 1..249 | 98 | -> | Plus |
| arm_2R | 16945889..16946058 | 250..419 | 100 | -> | Plus |
| arm_2R | 16946117..16946567 | 420..871 | 99 | | Plus |
