FMO01057.5prime Sequence
1253 bp (883 high quality bases) assembled on 2008-03-07
> FMO01057.5prime
AAAAACGAAGTTATCAGTCGACATGGGCAACTCGCAACCGCGTAATGCAA
GCAGAAGCAGAAGGACATCCCAGTGGCCACAAGGCGCAGCGGAACTAGGC
GCCTCAGCCAGCGATCACCACTACCACCAGGAGGAGCTGTATCAGGAGCA
GCAGCAGCAGCAACAACAGCCGCAACAGGAGCAACCGAGCAGCAGGAGAA
TCCAGTTCCAGGCCCACACCAACCAGCCAACACAGTCGCATCCTCCGGGC
GACGAGGAACAGCCTGTACAATCACAGCAGCAACAGCTTTCCACCTGGAG
TCTTGGCAGCCTTAGCGGAGGACGACTCAACTGGAGCTTCTCCGGTGCCC
GCAACTCATTTCGTCATCGAAACAAGGCCACGCGAAAGAGCTTGACCTCA
CTTCATGGCTCTCGTCGTGGCAAGACTCAGTGGCACCTTTCCTCTGACCA
ACTCAATCTTCAACTCGCACTTTAAGGAGACCAGCAAGAACGATCTGTAC
CGTATCGATCATTTGGTGGCCAAGGGAGCCTTTGGCGTGGTCTTCAAGGT
GTCCAGCAAGAGTGACATTAGTCAGTGCTACGTCCTGAAAGTGCTAAAGA
AATCAAAGCTCATCGAAGACAACAGTGTACGGCAGATAAAGGACGAGGCG
GACATTCAGAAGGTTTGCGGCCATCATCCGTTTATCGTGAAGCAAATAGA
TCTGTGGCAAAACCGCCACAACCTCCATATTCTATCGGAGTACGTACCCA
ACGGCGAGTTGTTCTCAAAAATAACTCACTTCTCCATTGATCTGGTTCGT
TTATATATTGGCGAGATAGCACTTGCCTTGATTTTCTCCACAACGCTGGG
ATTATATATCGTGATGCGAAGCCTGAGAACATCCTTGCTAACTGAACAGT
TTCACATAAAGCTAACCGACTTCGGCTTACAAGTGGCTCAAACTGGGGGC
TAACACTGCGCACATGTGTTGCACTTTCAATACATGGCCCGGAATATTCT
GTGCGGGGAACCTATGGCCATGCGGTGGAATTGGTGGGCCTTGGGGTTTT
TGCTTGTTCGAATGCTGACGCATATCGCCAACATCAACGCCACCTTACTG
CAACGCGTGAGAGCTGTGAACCGGGAGGAAGGCCTGTTCAATGCCTATCC
ATTGCTGATTAACGGCTCCTGAGCAATGACGGCAACGCGAGGACTTCCTG
GCTGGAGAGAAGTGGCAACACTCTACCACAGGAGGCAAAGGGAATAGTGG
CTC
FMO01057.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pk17E-RA | 2129 | CG7001-RA | 369..1559 | 23..1200 | 4955 | 95.6 | Plus |
| Pk17E-RC | 2123 | CG7001-RC | 369..1553 | 23..1200 | 4855 | 95.1 | Plus |
| Pk17E-RB | 1651 | CG7001-RB | 145..1081 | 277..1200 | 3685 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18788832..18789089 | 23..280 | 1290 | 100 | Plus |
| X | 23542271 | X | 18790675..18790893 | 389..608 | 1005 | 98.2 | Plus |
| X | 23542271 | X | 18790956..18791081 | 607..732 | 630 | 100 | Plus |
| X | 23542271 | X | 18790503..18790615 | 278..390 | 565 | 100 | Plus |
| X | 23542271 | X | 18791300..18791451 | 830..980 | 485 | 90.8 | Plus |
| X | 23542271 | X | 18791146..18791243 | 733..830 | 475 | 99 | Plus |
Blast to na_te.dros performed 2014-11-28 22:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6887 | 153..310 | 202 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6996 | 76..285 | 198 | 60.6 | Plus |
FMO01057.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:01 Download gff for
FMO01057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7001-RA | 367..1404 | 23..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:44 Download gff for
FMO01057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk17E-RA | 369..1406 | 23..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:41 Download gff for
FMO01057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk17E-RA | 369..1406 | 23..1057 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:41 Download gff for
FMO01057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18788832..18789089 | 23..280 | 100 | -> | Plus |
| X | 18790506..18790615 | 281..390 | 100 | -> | Plus |
| X | 18790677..18790893 | 391..608 | 98 | -> | Plus |
| X | 18790958..18791081 | 609..732 | 100 | -> | Plus |
| X | 18791146..18791244 | 733..830 | 97 | -> | Plus |
| X | 18791301..18791459 | 831..987 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:44 Download gff for
FMO01057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18682865..18683122 | 23..280 | 100 | -> | Plus |
| arm_X | 18684539..18684648 | 281..390 | 100 | -> | Plus |
| arm_X | 18684710..18684926 | 391..608 | 98 | -> | Plus |
| arm_X | 18684991..18685114 | 609..732 | 100 | -> | Plus |
| arm_X | 18685179..18685277 | 733..830 | 97 | -> | Plus |
| arm_X | 18685334..18685492 | 831..987 | 94 | -> | Plus |
