FMO01060.5prime Sequence
1171 bp (947 high quality bases) assembled on 2008-02-20
> FMO01060.5prime
CAGTCGACATGACTGACCAACCAACTCCACAGTGGGTGACCAAGGAGCTA
TTCAGCAGCTTGTTGGAACAGAGTAATCGAAATTTCAAGGCGATCATTAA
ATTTGTTCCAACATCAGCGATTAGCAAAGGGGAAAACTATTTGACGATCG
TGCTGCGCATACAAATTGAAATGCAGCTGAAAGATAACAGCATAGAAGAT
GTCAGCTACATACTGAAGATTCCTTTAGTCCCGGAAGATGAGAAGAACGA
CTTCCACGAAATGTTCGATGCCGAACTGGACATGTACGATCATCTGATAC
CAGAATTGGAGGATCTATATGCCAAAAACACTTCCATATCACCAAAATTC
AAGCCTGTTCATCTGAAGTTTCCAGGAGAGCCGGTAAAAAGCGACTACAT
TCTTTTGGAGGATCTGCGGAAGAATTGATATAGGAATGCCGACAGAACCC
AGGGATTGGAGCAGTTTGAAGTGGAGGCGGTCCTCAAGAAGTTGGCACAG
TGGCACGCAGCCTCTGCAAAAAGAGTAGTCGAGCTGGGTGAATACGAGAA
GGACATCCGGGAGAGTTACTTTACTACTGAGCACCAGAAATTACTCGATG
AATTCAACATTAATTTTTGTATGCCCTTCCTGGAGTGCATGCAGCAATAT
AATCTTGAGCCAGGACAGCTCGTTCTCATAAGCGACTATACATCTCAACT
GACGGATCTGAATATTGAGTTTGGTAAGAACGATCCTCTGGAGTTATCTG
TGTTAAACCACGGAGATTTTTGGTGCAATAACTTTATGTTCAAGTATAAA
AACGCCTCAGAAGTGGAGGACGTTTGCTTTGTTGACTTCCAGCTCCCAAA
TATGGCACACCCGCCCAAGATCTTCTATGCATACTGATGACCTCACCTAA
GTCTTCAATCAAACTGTACAAATTCGACGATTTCATAGAGTATTATCACC
AGCAGCTAGTCGACACCTCACTATGCTCATACATCGGAATGCACCCACCC
TATCCAAGTTCCACGCCCATCTACTCGATATAATCTCTGGGCCTTTCATA
TGCGCGAGCTAATGCTTCCATGTTCAGGTCCCGCGATGTGAATCCATATC
AGCACGATATGTAATCCGAAGAGCGATCCATAACGTAAAGTTCGTGCGCT
ACGGATCGATTACGCCTAATG
FMO01060.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHKov2-RA | 1450 | CG10675-RA | 58..1141 | 9..1084 | 5015 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25330423..25330921 | 680..182 | 2465 | 99.6 | Minus |
3R | 32079331 | 3R | 25330968..25331146 | 187..9 | 880 | 99.4 | Minus |
3R | 32079331 | 3R | 25330203..25330372 | 850..681 | 850 | 100 | Minus |
3R | 32079331 | 3R | 25329950..25330142 | 1041..854 | 660 | 94.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:15 has no hits.
FMO01060.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:42:56 Download gff for
FMO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10675-RA | 49..1131 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:42 Download gff for
FMO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 50..1132 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:40 Download gff for
FMO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 50..1132 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:40 Download gff for
FMO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25329950..25330141 | 855..1041 | 94 | <- | Minus |
3R | 25330198..25330372 | 681..854 | 99 | <- | Minus |
3R | 25330423..25330919 | 184..680 | 99 | <- | Minus |
3R | 25330972..25331153 | 1..183 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:42 Download gff for
FMO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21155672..21155863 | 855..1041 | 94 | <- | Minus |
arm_3R | 21155920..21156094 | 681..854 | 99 | <- | Minus |
arm_3R | 21156145..21156641 | 184..680 | 99 | <- | Minus |
arm_3R | 21156694..21156875 | 1..183 | 97 | | Minus |