FMO01067.5prime Sequence
1210 bp (997 high quality bases) assembled on 2008-02-20
> FMO01067.5prime
CAGTCGACATGCCGCCCACCATAACCGATAATCAGACGCACGACTTTAAG
GCCCACTACGATTGCGCCCACAGGTCCTCGCTGCAGGACGACGAGACGGA
CGATGCGTACGTGAAAAGGATAACGCGGTACTCCGATGGAACCGTCAAAT
TGCGCAACTCGAACATTGAGCTCATGGACCAGGATATCCTCTATCACCTG
GCCTTGGGCAGCGAGAGCCACGACCTGCAGGAGATGTTTGGCGACGTTAA
GTTCGTTTGCATGGGCGGCACACCAAAGCGCATGGAGAATTTTGCCCATT
TCATAATGAACGAGATTGGCTACAAGTTGCCAGCGGGCACCCAGCTGCAG
GACATCAGCGCCTATTCGTATCGCTACTCCATGTACAAAGTGGGACCGGT
GCTGTGCGTCAGCCATGGCATGGGTACGCCCTCGGTCAGCATCCTGATGC
ATGAGATGATCAAGCTGATGTACCACGCCAAGTGCAAGGATCCCGTCTTC
ATCAGGATAGGAACGTGCGGAGGAATTGGCGTCGACGGCGGCACCGTCAT
CATCACCGAAGATGCCCTCGATGGGCAGCTGAGGAACTCCCATGAGTTTA
CCATTCTCGGCAAGACCATCCATCGTCCTGCCAAGCTGGACAAAAAGCTG
GCCCGTGAGCTAAAGTCCCTGGCCAGTCCCGATGATCCGTACGATACCAT
TATTGGCAAGACGCTGTGCACCAACGATTTCTACGAGGGCCAGGGTCGTT
TGGACGGCGCATTCTGTGATTTCAGCGAGAACGAGAAGATGGCCTATCTG
GAGAAGCTGCGCGAGAACGGCGTGTCAACATCGAGATGGAGAGCACCATC
TTTGCGGCCCTGACCCACCATGCCGGCATCAAGGCAGCGGTGGTGTGTGT
CGCCCTGCTGAACCGCCTCAATGGGGATCAGTCAACGCGCCCAAGGAGGT
CATGAACGAGTGGCAGCGCGTCCGCAGATCCTCGTGTCGCGCTATATTCC
GCAGTCCTTACGCACAATGGACAGCTGGAGGGGCTATTTCGGAAACCAGG
ATCCTCCAGTCACCCCGGCGCTTCAGCTCGTCAGAAGGGTCTCAGCCACG
AGCAGCCTTCTAACATCGATGGGCGCGGCAGGTATGGACTAACTAACTAA
TTAAGATCACATAGCCTAGGATCTGGCTGACATGGCTTGAATTCACAATA
AAAAGCTCCC
FMO01067.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6330-RA | 1541 | CG6330-RA | 132..1236 | 8..1102 | 5130 | 98.3 | Plus |
| CG6330-RB | 2075 | CG6330-RB | 355..1339 | 128..1102 | 4530 | 98.1 | Plus |
| CG3788-RB | 1758 | CG3788-RB | 928..1104 | 377..553 | 345 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26951072..26951428 | 599..243 | 1755 | 99.4 | Minus |
| 3R | 32079331 | 3R | 26950642..26951009 | 965..600 | 1740 | 99.5 | Minus |
| 3R | 32079331 | 3R | 26951775..26951899 | 251..127 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 26953001..26953123 | 130..8 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 22932746..22932922 | 553..377 | 345 | 79.7 | Minus |
| 3R | 32079331 | 3R | 26950460..26950569 | 1075..968 | 255 | 86.4 | Minus |
Blast to na_te.dros performed 2014-11-28 19:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 200..283 | 255..173 | 111 | 60.7 | Minus |
| Tabor | 7345 | Tabor TABOR 7345bp | 7039..7122 | 255..173 | 111 | 60.7 | Minus |
FMO01067.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:40:28 Download gff for
FMO01067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6330-RA | 127..1225 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:01 Download gff for
FMO01067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6330-RA | 129..1227 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:12 Download gff for
FMO01067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6330-RA | 129..1227 | 1..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:12 Download gff for
FMO01067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26950638..26951009 | 600..968 | 99 | <- | Minus |
| 3R | 26951072..26951419 | 252..599 | 100 | <- | Minus |
| 3R | 26951775..26951898 | 128..251 | 100 | <- | Minus |
| 3R | 26953004..26953126 | 1..127 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:01 Download gff for
FMO01067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22776360..22776731 | 600..968 | 99 | <- | Minus |
| arm_3R | 22776794..22777141 | 252..599 | 100 | <- | Minus |
| arm_3R | 22777497..22777620 | 128..251 | 100 | <- | Minus |
| arm_3R | 22778726..22778848 | 1..127 | 96 | | Minus |
