FMO01069.5prime Sequence
729 bp (729 high quality bases) assembled on 2008-03-07
> FMO01069.5prime
ATAAAAAGAAGTTATCAGTCGACATGAGTTTCTTCGGGAAGATGTTCGGC
GGCAAGAAGGAAGTGGCCCCCACCACCGGCGAGGCGATACAGAAGCTGCG
CGAGACGGAGAACATGCTTATCAAAAAGCAGGAGTTCCTGGAGGCCAAGA
TCGAGGACGAACTGAATATAGCCCGCAAGAATGCGTCTAAAAACAAAAGA
GTGGCCCTGCAAGCACTCAAGAAAAAGAAGCGGCTGGAGAAGCAACTCCA
GCAGATCGATGGCACCCTGTCCACAATCGAAATGCAGCGCGAGGCTCTGG
AGAGCGCCAACACAAACACTGCCGTCTTGACCACGATGAAGAATGCCGCG
GATGCCCTCAAGAGAGCCCATCAGAATATGGACGTGGACAAGGTGCACGA
CATGATGGATGACATTGCCGAGCAGCAGGACGTGGCCCGCGAGATTTCCG
ATGCCATTTCGAACCCAGTGGCATTCGGCGCCGATCTGGATGATGAGGAT
CTCGAGCGGGAACTCGACGAGCTGGAGCAGGAGAACTTTGATAAGGAAAT
CATTGGCATACCCGAGCCGACGCCCACATTGCCAGAAGCACCCACAGAAG
ATTTGCCCGAGAAGGCCAAAGAAAAGAAAAAGGCGACAACCACGACTGCC
GTGGAGGATGATGATGATCCAGACATGAAGCAGCTTTTATCCTGGTCCAA
CGCAAGCTTTCTAGACCATTTCGTTTTGT
FMO01069.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shrb-RA | 1267 | CG8055-RA | 118..795 | 24..701 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9142713..9143000 | 667..380 | 1425 | 99.7 | Minus |
| 2R | 25286936 | 2R | 9143058..9143238 | 380..200 | 905 | 100 | Minus |
| 2R | 25286936 | 2R | 9143620..9143797 | 201..24 | 890 | 100 | Minus |
| 2R | 25286936 | 2R | 9142618..9142656 | 701..663 | 195 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:26:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| baggins | 5453 | baggins BAGGINS 5453bp | 1580..1648 | 471..536 | 122 | 66.7 | Plus |
FMO01069.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:04 Download gff for
FMO01069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8055-RA | 104..794 | 14..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:51 Download gff for
FMO01069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shrb-RA | 108..798 | 14..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:00 Download gff for
FMO01069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shrb-RA | 108..798 | 14..705 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:00 Download gff for
FMO01069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9142614..9142655 | 664..705 | 95 | <- | Minus |
| 2R | 9142717..9143000 | 380..663 | 100 | <- | Minus |
| 2R | 9143059..9143236 | 202..379 | 100 | <- | Minus |
| 2R | 9143620..9143807 | 14..201 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:51 Download gff for
FMO01069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5030119..5030160 | 664..705 | 95 | <- | Minus |
| arm_2R | 5030222..5030505 | 380..663 | 100 | <- | Minus |
| arm_2R | 5030564..5030741 | 202..379 | 100 | <- | Minus |
| arm_2R | 5031125..5031312 | 14..201 | 97 | | Minus |
