FMO01072.5prime Sequence
1154 bp (439 high quality bases) assembled on 2008-03-07
> FMO01072.5prime
CCATAAAGACAAAGTTATCAGTCGACATGACTGACCAACCAACTCCACAG
AAAGGTGACCAAGGAGCTATTCAGCAGCTTGTTGGAACAGAGTAATCGAA
ATTTCAAGGCGATCATTAAATTTGTTCCAACATCAGCGATTAGCAAAGGG
GAAAACTATTTGACGATCGTGCTGCGCATACAAATTGAAATGCAGCTGAA
AGATAACAGCATAGAAGATGTCAGCTACATACTGAAGATTCCTTTAGTCC
CGGAAGATGAGAAGAACGACTTCCACGAAATGTTCGATGCCGAACTGGAC
ATGTACGATCATCTGATACCAGAATTGGAGGATCTATATGCCAAAAACAC
TTCCATATCACCAAAATTCAAGCCTGTTCATCTGAAGTTTCCAGGAGAGC
CGGTAAAAAGCGACTACATTCTTTTGGAGGATCTGCGGATGAAGGGATAT
AGGAATGCCGACAGAACCCAGGGATTGGAGCAGTTTGAAGTGGAGGCGGT
CCTCAAGAAGTTGGCACAGTGGCACGCAGCCTCTGCAAAAAGAGTAGTCG
AGCTGGGTGAATACTATAAGGACATCCGGGAGAGTTACTTTTACTACTGA
GCACCAGAAATTACTCGATGAATTCAACATTAATTTTTTGTGTGCCCTTC
CTGGAGTGCATGCAGTAATATTAATCTTGAGCCAGGACAGCTTCGTTCTC
ATAACCGACTATACTCTCAACTGACGAGATCTGAATATTGATTTGGTAAT
ACGATCCTCTGGAGTTATCTGTGTTAAACCACGGAGATTTTGGTGCATTA
CTTTTATGTTCAGTATATATACGCCTCTAAAGTGGAGGATGTTTGTTTTT
GTTGACTTCCAGCTCCCAAATATTGCCCACCCGCCCATAAGACCTCCATG
GCATACTGGTGACCTCCACCTAAGTTTTTCATCCATCTGGGACAATTCGA
CTATTTCTAGAGTTTATTCCACACAGTTAGTCGATCCTCTCTTAGCTCAT
AACTATCGTAATGCACCCACACTACTAGGTTCACGCCCTCTTCACGTAAT
AGGTTTCTGGGTTTTCTATTGCCCCCACGGATGGCTTCCCTTGGTTCTGC
TCTCCGCGCCGAAGGTTTGATCCCCATTAATGGCCATCCTAATTGGGTAA
AAAT
FMO01072.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CHKov2-RA | 1450 | CG10675-RA | 58..1137 | 27..1102 | 3865 | 92.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25330423..25330921 | 703..201 | 2240 | 98.2 | Minus |
| 3R | 32079331 | 3R | 25330968..25331146 | 206..27 | 805 | 97.8 | Minus |
| 3R | 32079331 | 3R | 25330203..25330360 | 870..715 | 350 | 90 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:38 has no hits.
FMO01072.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-05-23 17:43:03 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 23:22:34 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 20:49:10 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:10 Download gff for
FMO01072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25330423..25330919 | 203..703 | 98 | <- | Minus |
| 3R | 25330972..25331153 | 20..202 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:34 Download gff for
FMO01072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21156145..21156641 | 203..703 | 98 | <- | Minus |
| arm_3R | 21156694..21156875 | 20..202 | 96 | | Minus |
