FMO01074.5prime Sequence
1239 bp (997 high quality bases) assembled on 2008-03-07
> FMO01074.5prime
CAGTCGACATGGCGATGAACAGTGGGACGCAAACGAATGCGCTGACATCA
TCCTTTACCATGAAGAAAAAGGATGCGGCCGCGGAAAAGGAGAACCTATG
GTCGGCGATATTGAATGAAGTACAAACACAGGGCAGCACAAAACTTCCAT
CAAACAAATCTGTACTAGTATTAGGCGACAATGCCACCGGAAAGACGACA
CTCATTGCCAAACTGCAGGGCGTCGAGGATCCGAAAAAGGGTTCCGGCCT
GGAGTATGCCTACATTGATGTCAAGGATGAGTACAGAGACGACATGACGC
GTTTAGGCGTTTGGGTCCTGGACGGTGATCCAGGACACACAAACCTGCTA
CACTATGCGCTCAACGAAACGAACTATGCACACACACTCGTCATCCTCAC
CGTTTCGATGACGCAGCCGTGGGGCTGGCTGGAGCAGCTAAACCATTGGA
TCAAGGTCCTCGGCCAGCACATCGATAGCCTGCAGCTGGACGCCAAAGAG
AAGGAGGCGGCCCGCCAGCGACTGACCACCACGTGGCAGAGCTACTGTGA
GGTGGGCGACGATCTGGATCCAGGCTCCCCCGTCAAGCGGACGATGCGCA
ACAACTCGATCGACGAGGATGACCTGCTGCCGCTGACGGAGGATGCACTA
ATTACAAATCTGGGCCTCGACATCGTTGTTGTGGTCACAAAGACGGACTA
CATGACCACGCTAGAGAAGGAGTACGAGTATCGTGACGAGCACTTTGACT
TCATCCAGCAGTGGATACGTAACTTCTGCCTGCGGCATGGCACTTCGCTC
TTCTACACGAGCGTCAGGAAGACAAGAACTGTGATGTCCTCTACAAGTAT
CTGACGCATCGAATTTATGGTCTACCATTCCGTACGCCAGCGCTAGTCGT
TGAGAACGATGCGGTACTCATTCCGGCTGGCTGGGATAGCCTGAAGAAGA
TTAGTATTTAATACGAAAATATGCATGGAAGTCAAGGCGAAAATCCTAAA
CAGACATTATCAAATCGCCACCAACTAAAAAGGCGGTTTCAATCGCGAAG
CGAATGCAGACGAAGAATGATCAGCATTCCTGCACGCAGACTGAATTCTA
TGCAGGCAACCGGTGCGCGTGGAATACACTTGCAAATCCAAGGCGATAAG
CACCAATAAAAGCGTATCAGAAGTCCGTACACTGGACCAGAGTTTGTACT
CAAAGTATAGTATCTTGAGCGTAGAGCCGACGAAAGGCG
FMO01074.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dlic-RA | 2241 | CG1938-RA | 347..1434 | 7..1087 | 5055 | 98.2 | Plus |
| Dlic-RD | 3715 | CG1938-RD | 347..1434 | 7..1087 | 5055 | 98.2 | Plus |
| Dlic-RB | 3371 | CG1938-RB | 97..1090 | 101..1087 | 4585 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11161317..11161718 | 291..692 | 2010 | 100 | Plus |
| X | 23542271 | X | 11161781..11162012 | 691..921 | 1095 | 99.1 | Plus |
| X | 23542271 | X | 11161060..11161251 | 100..291 | 945 | 99.5 | Plus |
| X | 23542271 | X | 11155135..11155230 | 7..102 | 480 | 100 | Plus |
| X | 23542271 | X | 11162086..11162198 | 922..1033 | 350 | 89.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:24:18 has no hits.
FMO01074.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:43:07 Download gff for
FMO01074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1938-RD | 347..1415 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:34 Download gff for
FMO01074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic-RD | 342..1410 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:09 Download gff for
FMO01074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dlic-RD | 342..1410 | 1..1065 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:09 Download gff for
FMO01074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11155130..11155228 | 1..100 | 97 | -> | Plus |
| X | 11161061..11161251 | 101..291 | 99 | -> | Plus |
| X | 11161318..11161718 | 292..692 | 100 | -> | Plus |
| X | 11161783..11162012 | 693..921 | 99 | -> | Plus |
| X | 11162086..11162192 | 922..1027 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:34 Download gff for
FMO01074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11049163..11049261 | 1..100 | 97 | -> | Plus |
| arm_X | 11055094..11055284 | 101..291 | 99 | -> | Plus |
| arm_X | 11055351..11055751 | 292..692 | 100 | -> | Plus |
| arm_X | 11055816..11056045 | 693..921 | 99 | -> | Plus |
| arm_X | 11056119..11056225 | 922..1027 | 93 | == | Plus |
